1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggatatcttgccgaatattttcaatgtgaatgtatcagcatagtgttacaaaataccaaaatactcactgtttccattcttatacatgttctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTCAAACTTACTGGATTTCTGAAGGAACTAATGCAGCAGAGAAA
species | Oryza sativa |
transcript | LOC_Os04g57210.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTA TATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAGEST: gi|29671066|gb|CB667341.1|CB667341
genomic: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtactt ... ctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
EST: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTA TATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
genomic: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtactt ... ctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
ttacaaaataccaaaatactcactgtttccattcttatacatgttctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTCAAACTTACTGGATTTCTGAAGGAACTAATGCAGCAGAGAAA
tactcac putative branch site (score: 28)
tgttctttc putative PPT
attcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatatcttgccgaatattttcaatgtgaatgtatcagcatagtgttacaaaataccaaaatactcactgtttccattcttatacatgttctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTCAAACTTACTGGATTTCTGAAGGAACTAATGCAGCAGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA