1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctagtgaggtttcttcaccaagaggaaagaatatttttgtggtgaagtctttttccttcagaaaggattgttgactgatgtatgttcatcctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG
species | Oryza sativa |
transcript | LOC_Os04g56646.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTCATGTTCCTTCAG-AAATAGCTGCCCACGAGGTTGAGGAAATCG GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGEST: gi|29619248|gb|CB624260.1|CB624260
genomic: TTTGTTCATGTTCCTTCAGCAAATAGCTGCCCACGAGGTTGAGGAAATCGgtatgtctgt ... ctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTG
EST: TTTGTTCATGTTCCTTCAG-AAATAGCTGCCCACGAGGTTGAGGAAATCG GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGEST: gi|86594361|gb|CI251233.1|CI251233
genomic: TTTGTTCATGTTCCTTCAGCAAATAGCTGCCCACGAGGTTGAGGAAATCGgtatgtctgt ... ctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTG
EST: TTTGTTCATGTTCCTTCAG-AAATAGCTGCCCACGAGGTTGAGGAAATCG GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGEST: gi|29619285|gb|CB624297.1|CB624297
genomic: TTTGTTCATGTTCCTTCAGCAAATAGCTGCCCACGAGGTTGAGGAAATCGgtatgtctgt ... ctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTG
EST: TTTGTTCATGTTCCTTCAG-AAATAGCTGCCCACGAGGTTGAGGAAATCG GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTG
genomic: TTTGTTCATGTTCCTTCAGCAAATAGCTGCCCACGAGGTTGAGGAAATCGgtatgtctgt ... ctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTG
agtctttttccttcagaaaggattgttgactgatgtatgttcatcctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG
gactgat putative branch site (score: 39)
ttcatcct putative PPT
tacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagtgaggtttcttcaccaagaggaaagaatatttttgtggtgaagtctttttccttcagaaaggattgttgactgatgtatgttcatcctacttatagGAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAG
- - - - - - cttcacc
- - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatc