1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaatgacaagtacttaactactaacatgctgtcaccatgctagattgtagctttcccatttttgaaaaacaaaatcctcattatcggcatgattatggtgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG
species | Oryza sativa |
transcript | LOC_Os04g54474.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAG GCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGEST: gi|29642525|gb|CB647532.1|CB647532
genomic: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAGgtaaaatgac ... tgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAG
EST: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAG GCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGEST: gi|29640853|gb|CB645860.1|CB645860
genomic: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAGgtaaaatgac ... tgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAG
EST: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAG GCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGEST: gi|29659308|gb|CB655583.1|CB655583
genomic: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAGgtaaaatgac ... tgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAG
EST: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAG GCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAG
genomic: GACTTGCACAAAACAGAGAGGCTGCACGGAAAAGCCGCCTGCGGAAAAAGgtaaaatgac ... tgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAG
tcccatttttgaaaaacaaaatcctcattatcggcatgattatggtgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG
tttttgaaaaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatgacaagtacttaactactaacatgctgtcaccatgctagattgtagctttcccatttttgaaaaacaaaatcctcattatcggcatgattatggtgttccatagGCTTATATCCAACAGCTGGAGACAAGCCGGTTGAAACTAGCGCAGTTAGAGCAAGAGCTTCAACGGGCCAGGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT