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gttactagagctagtttattttgtatgtaacttgagagatgatggaccataataatcaaccatttaacatgttttttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAAAAGATAGGGAAGGTTTTTGAGACTATATTGGAAGAG
species | Oryza sativa |
transcript | LOC_Os04g53190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|29612733|gb|CB617746.1|CB617746
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|58680122|gb|CK068809.1|CK068809
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|58663716|gb|CK052402.1|CK052402
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|33797085|gb|CF324408.1|CF324408
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|58683985|gb|CK072672.1|CK072672
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAEST: gi|300216051|gb|HO088677.1|HO088677
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
EST: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAG TTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
genomic: TATCGCACAAGTGGAGATGACTCTGTGCTGTTTGATCATGACCTTGAGAGgttactagag ... tttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGA
acttgagagatgatggaccataataatcaaccatttaacatgttttttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAAAAGATAGGGAAGGTTTTTGAGACTATATTGGAAGAG
atttaac putative branch site (score: 64)
catgttttttccctc CT-rich tract
atttaacatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactagagctagtttattttgtatgtaacttgagagatgatggaccataataatcaaccatttaacatgttttttccctcagTTATGCTCTCTATGACACTAAGGGCCATCAAGTTCCCCAAGAGCTGGTAGAAAAGATAGGGAAGGTTTTTGAGACTATATTGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA