Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT

Basic information

species Oryza sativa
transcript LOC_Os04g51630.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
--------gtttgccaccttgaatctcact----tgttctgcttttactgtgtcaatt-----ggtaccttacag-tcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
          |||  ||  |  ||||   |    ||||||| || || | || |||||     | |    | ||  | ||||||||  |||||||| ||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
gtttgtaaacttggaactctacatctggttcctgtgttctgtttata-tatgacaatttacatgatgatctccaccttttggtgttc-tatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 6
--------------------------gtttgccaccttgaatct-cacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                          | || |    ||   | |  | |||||    ||| ||  | | |  || |    | ||   || ||  || |||||||| ||||  |||||  | ||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
gtttgtaaacttggaactgtacatctggttcctgtgttctgtttatatttgtttatatttgacaat-ttacatgatgatctccaccttttgttgttctatcagGGCTTGGACAAGCAAAAAATCATCTGCGTCGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCGAACAACTTCCTGTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 6
--------------gtttgccaccttgaatctcacttgttctgcttttactgtgtcaatt-----ggtaccttacagt-cttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
              | |   ||||| | |||     || ||||||| || | || |||||     | |    | ||    ||||||||  |||||||| ||||| |||||  ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||
gtttgcaatcttgagctctgcacct-ggatcctttgtgatctgcttgtatt-tgacaatttacatgatgatctccaccatttggtgttc-tatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA09G06860.1 (Glycine max), 3'ss of exon 6
-----------------gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtacctt-acagtcttggtgtttg-tatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                 | | | || ||| ||         ||     |||  | | | | |  ||   ||  | | | |    ||   |  |||  |||||| |||||||  ||||| ||| |||| |||||  | ||||||||  |||||||||| || |||||||||||||||||||| || || ||||| |
gtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCATTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 6
--gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtat--cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
   ||    |  ||  |  ||     | | | |||||     | |||| |   | | |    |   || ||| ||  |||| | |||| ||| |||  ||||| | || ||| |||||  | ||||||||||| |||||||| || || || |||||||| ||||||||||| |||||||
gtattgtttattttacaattcttccttacagatttta----attaattcgctacatgcttcttacttgcttggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
-----------------gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagt--cttggtgtttg-tatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                   | | |  ||  || | |     ||     |||  | | | | || ||   || |  |  | |    ||   |  |||  |||||| |||||||  ||||| ||| |||| |||||  | |||||||||||||||||||| || || ||||||||||||||||| || || ||||| |
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacattcaatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 6
gt-ttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
|| |||  |  ||  |  ||  |  | |   ||| | |   |  | |   |   | | | |||| | |   |  ||||   |||| ||  |||  ||||| | || ||| |||||  | ||||||||||| |||||||| || || || |||||||| ||||||||||| |||||||
gtattgttaatttacaattctgtattacaaatttgaattaattcacta-catgcttctgacttgct-tggatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 6
-------gtttgccaccttgaa--tctcacttgttctgcttt-tactg-tgtcaa-ttggtaccttacagtcttggtgtttgta-----------tcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
        | || | |  ||    |||  ||| ||  | ||| | ||| | |||| ||     || ||    |     |   ||           ||||| | | || |||||||  ||||| |||| ||||||| |  | || |||||  | || || || || ||||||||||| |||||||||||||| |||||||
gtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCCAACAACTTCCTTTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: AT2G01250.2 (Arabidopsis thaliana), 3'ss of exon 6
-------gtttgccaccttgaa--tctcacttgttctgcttt-tactg-tgtcaa-ttggtaccttacagtcttggtgtttgta-----------tcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT-------------------------------------------------------------------------------
        | || | |  ||    |||  ||| ||  | ||| | ||| | |||| ||     || ||    |     |   ||           ||||| | | || |||||||  ||||| |||| ||||||| |  | || |||||  | || || || || ||||||||||| |||||||||||||| |||||||                                                                               
gtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcaggctcttggaaagcatggtatcatttgcactgaggatttgatccacgagattctaacagtaggacctcatttcaaggaagCCAACAACTTCCTTTGGCCATTCCAGCTTAAGGCACCACTAGGTGGCCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGA

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------------------------------------------------------gtttgcca--ccttgaatctcacttgttctgcttttactgtgtcaattg-gtacct-tacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                                                                                                                       || |  ||    | || | ||| || |  |       || ||||   |   ||  |  | |  ||| |   ||| |||||||  | || ||||||| |||||||||| ||||||||||  | |||||||||||||| ||||| |||||||||||||| ||||| |||||  | |||||||
gtgcatatcatcaacctatctccttcatcaagtctggttcagttcctaaagtcaatattattgccgttatccctgtcctagaaaaaatgatgtattatcatcaatgttggattcaatttgtctaacagatatggattgtcatttatcatcaaaactctatgtcttctctatatttacatatcctttgctgttgaatcagGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
----gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtat--cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
     | || ||   || ||||   || |         | ||| |    |      || |   | || | ||   ||   ||| |||||| |||  ||  || || ||||| || |||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||
gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 4
----gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtat--cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
     | || ||   || ||||   || |         | ||| |   ||      || |   | || | ||   ||   ||| |||||| |||  ||  || || ||||| || |||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||
gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 4
-gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtat--cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
  |||     | || ||||   || || |      | ||| |    |      || |   | || | ||   ||   ||| |||||| |||  ||  || || ||||| || |||||| ||||||| |||||||||||||| || ||||| |||||||||||||||||||| || ||||
gtttttatgtcctgtatcttggttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGGATTATTTGCATGGAAGATCTTATTCATGAAATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGACCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 6
gtttgccacc--ttgaatctcacttgt---tctgcttttactgtgtcaattggtaccttacag---tcttggtgt-ttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
|||||       || |||  || || |   |  | | |     | | || |||    | |  |   | ||||| | || |  |||| |||||| |||  ||  ||||| |||||||| |||||  | |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||
gtttgttgtaggttaaataacatttatatgttcgatgtattgctataaactggcttttcaatgacattttggtatgttattgcagGCTTTGGGCAAGTTTGGAATCATTTGCATTGAAGATCTCATCCATGAGATTATGACTGTTGGGCCACACTTCAAGGAGGCAAACAACTTCCTGTGGCCAT

upper sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S2_667V6.2 (Physcomitrella patens), 3'ss of exon 4
-----------------------gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttac-agtcttggtgtttgtat-cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                              |   | | |   || ||   ||  |    ||     |||   |||| |  | |  || || || | |  |||   | || |||   |  ||||| || |||||||||||  ||||||||||| | |||||||| || || |||||||| |||||||||||  | ||| | |
tcgtataaatagctgcattgcgacacaattaaaattagtaggacctgacgtgtatcctttgcagtgattt-cacctgatgaattctgttgattttgtgtagGCACTTGGAAAGTTGGGTATCATATGTATTGAGGATCTCATTCATGAGATCTTCACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTTTTATGGTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88472061|gb|CI409332.1|CI409332
EST:     GCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: GCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|2797323|gb|AA750617.1|AA750617
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGA
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGA
EST: gi|88465055|gb|CI514827.1|CI514827
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|86527124|gb|CI167330.1|CI167330
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCGGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88257066|gb|CI359454.1|CI359454
EST:     AGCTCAACAAGCAAAAAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATGTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|29618048|gb|CB623060.1|CB623060
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|569132|gb|D39981.1|D39981
EST:     TCATCGAGGAG                         GGTTGGGGTAAGCATGCCATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: TCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88464991|gb|CI514763.1|CI514763
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|11172981|gb|AU164554.1|AU164554
EST:     CAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: CAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88970101|gb|CI383603.1|CI383603
EST:     AAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88259696|gb|CI363989.1|CI363989
EST:     CAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: CAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88266136|gb|CI377038.1|CI377038
EST:     AACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88479827|gb|CI417098.1|CI417098
EST:     ACAAGCAAANAATCCCTGTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGGATCTTGTTCATGAGAT
genomic: ACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGA-GGATCTTGTTCATGAGAT
EST: gi|86899550|gb|CI327449.1|CI327449
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88543921|gb|CI473974.1|CI473974
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88365898|gb|CI545757.1|CI545757
EST:     CAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: CAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88560450|gb|CI491112.1|CI491112
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|29618050|gb|CB623062.1|CB623062
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88523853|gb|CI451715.1|CI451715
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|44674240|gb|CR287674.1|CR287674
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GTTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88276870|gb|CI396033.1|CI396033
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88524113|gb|CI452002.1|CI452002
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88536181|gb|CI465911.1|CI465911
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|29641909|gb|CB646916.1|CB646916
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88464395|gb|CI544856.1|CI544856
EST:     ACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: ACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88537286|gb|CI465113.1|CI465113
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|27577886|gb|CB000581.1|CB000581
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88529298|gb|CI457603.1|CI457603
EST:     AGCTCAACAAGCAAANAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTNCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88483090|gb|CI420361.1|CI420361
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88502454|gb|CI429960.1|CI429960
EST:     TCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: TCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88260700|gb|CI362993.1|CI362993
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|24468908|gb|CA305857.1|CA305857
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88380161|gb|CI516148.1|CI516148
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|27554300|gb|CA998200.1|CA998200
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88836018|gb|CI371123.1|CI371123
EST:     AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: AGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|15847027|gb|BI795303.1|BI795303
EST:     GCTCAAACAAGCAAAGAATCCCTCTTAC-AAC-ACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: GCTC-AACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88485421|gb|CI422692.1|CI422692
EST:     CAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: CAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
EST: gi|88483228|gb|CI420499.1|CI420499
EST:     GTCATCGAGGAG                         GGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC
genomic: GTCATCGAGGAGgtttgccacc ... tttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT
                            accttac  putative branch site (score: 3)
         ttttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG