Sequence
atgc intronic sequence ATGC exonic sequencegtaagtacaatttgtgctttctatatttggaattttcagctagaaatgcttaataatgattgtttctactgcatttctgtccatgcagGTTGTCCAGCTTACCAAATTTGACTACCGGGTTTCCAATAGGTTGGAGACTAACCTTCAAAAGCTTAGGTGCAGAGTCAATTATCATGCACTACAGTTCA
Basic information
species | Oryza sativa |
transcript | LOC_Os04g47520.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g47520.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G142664_T01 (Zea mays), 3'ss of exon 6
--------------------gtaagtacaatttgtgctttctatatttggaattttcagctagaaa--tgcttaataatgattgtttctactgcatttctgtccatgcagGTTGTCCAGCTTACCAAATTTGACTACCGGGTTTCCAATAGGTTGGAGACTAACCTTCAAAAGCTTAGGTGCAGAGTCAATTATCATGCACTACAGTTCA
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gtaagcattaatttttttttttgaatctgacatgt-ttcctgaagtctgacattttcagtgaaaaaaacgctcaattctgac-atcaattcttgagcgttgacc-tacagGTTGTTCAGTTAACCAAATTTGACTACCGATTGTCAAATAAGCTAGAGACTGATCTTCAAAAGCTTAGGTGTAGAGTCAATTATCATGCACTAAGGTTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58608156|gb|CK036189.1|CK036189EST: CTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTCTGAAAAAACAT GTTGTCCAGCTTACCAAATTTGACTACCGGGTT
genomic: CTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTTTGAAAAAACATgtaagtacaa ... gtccatgcagGTTGTCCAGCTTACCAAATTTGACTACCGGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagctagaaatgcttaataatgattgtttctactgcatttctgtccatgcagGTTGTCCAGCTTACCAAATTTGACTACCGGGTTTCCAATAGGTTGGAGACTAACCTTCAAAAGCTTAGGTGCAGAGTCAATTATCATGCACTACAGTTCA
gcttaat putative branch site (score: 4)
tttctgtcc putative PPT
ttaataatgattgttt TA-rich tract