1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggaaacatctatatgaaatcattagacacgtatgtggaatgctcgtgatatgtaaaagcaaagaggtttgcctatgcacttaacagtttaattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAAGATTTA
species | Oryza sativa |
transcript | LOC_Os04g46570.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGC-- --TTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAAEST: gi|4715473|gb|AU056590.1|AU056590
genomic: TGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaata ... aattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAA
EST: NCCTGGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGA GCTTTGCAGCTAACAAAGTTTGATTATCGGGGTCACGAACGAGCTTGATGA
genomic: -CCTG-ATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaata ... aattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGC-TCACTAACGAGCTTGATGA
gtgatatgtaaaagcaaagaggtttgcctatgcacttaacagtttaattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAAGATTTA
ttaacagtttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaacatctatatgaaatcattagacacgtatgtggaatgctcgtgatatgtaaaagcaaagaggtttgcctatgcacttaacagtttaattttgcagGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAAGATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT