1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttctcctatctatgtgagagagagagagagagttctcctctagcttctaactaaaagtgtatgaatcttactgatcctttgtactcgtacatctcaagGTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATGATAATACGAGGATAGAATATTATCACAAGCACCTTCTCGCCCTGCGAAA
species | Oryza sativa |
transcript | LOC_Os04g39814.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATG GTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATGEST: gi|86838866|gb|CI330300.1|CI330300
genomic: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATGgtaagttccc ... acatctcaagGTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATG
EST: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATG GTGGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATEST: gi|88227552|gb|CI227032.1|CI227032
genomic: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATGgtaagttccc ... acatctcaagGT-GTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAAT
EST: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATG GTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATG
genomic: TTATATCAAGGAAAACTACGGCAATCCTACCATCTTTATTACTGAAAATGgtaagttccc ... acatctcaagGTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATG
cttctaactaaaagtgtatgaatcttactgatcctttgtactcgtacatctcaagGTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATGATAATACGAGGATAGAATATTATCACAAGCACCTTCTCGCCCTGCGAAA
aactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttctcctatctatgtgagagagagagagagagttctcctctagcttctaactaaaagtgtatgaatcttactgatcctttgtactcgtacatctcaagGTGTTGATGAAGTCAATAACAAGACCATGCCACTCAAGGAGGCCCTGAATGATAATACGAGGATAGAATATTATCACAAGCACCTTCTCGCCCTGCGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT