1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttagttgttttgtcattttctttcaagttaattgaagaggctccttgattttttttccatactatgaaaatattaatgtctactggtgatttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAG
species | Oryza sativa |
transcript | LOC_Os04g37660.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATEST: gi|29619327|gb|CB624339.1|CB624339
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATEST: gi|88372968|gb|CI640419.1|CI640419
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATEST: gi|88333501|gb|CI656573.1|CI656573
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGGATGTACGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATCATTTCAAGTGATGGTGTTTGGGATEST: gi|40490361|gb|BX899888.1|BX899888
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTATGGGATEST: gi|88296263|gb|CI667653.1|CI667653
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATEST: gi|2310423|gb|C26578.1|C26578
genomic: AGGATGTAGGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: AGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATEST: gi|58605846|gb|CK033879.1|CK033879
genomic: AGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
EST: GGATGTAGTGTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAG CTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
genomic: GGATGTAG-GTGAATTTATCATTCCCGTGCCTTATGTGAAGCAGATCAAGgtattattaa ... atttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGAT
cttgattttttttccatactatgaaaatattaatgtctactggtgatttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAG
tattaat putative branch site (score: 2)
tttcttc putative PPT
ttttttttccatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagttgttttgtcattttctttcaagttaattgaagaggctccttgattttttttccatactatgaaaatattaatgtctactggtgatttcttcagCTATCAAGTGCTGGAGGCAGAATCATTATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAG
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