1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgctatatcttccatttccaattctaggcttcaattatttgttgatgttcatcatttctatgaattatgaatgatatttttccacttcatattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
species | Oryza sativa |
transcript | LOC_Os04g36050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCATEST: gi|33675031|gb|CF303270.1|CF303270
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCATEST: gi|29683509|gb|CB679784.1|CB679784
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCATEST: gi|109974448|gb|DT806914.1|DT806914
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCATEST: gi|84117031|gb|CD150798.1|CD150798
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCATEST: gi|33677398|gb|CF305637.1|CF305637
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
EST: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACG GTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
genomic: TCTTATTGGAAACCAAATGTAACAATAAATCTTGTTGACGACTTCACACGgtacgcaaag ... tattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
atgttcatcatttctatgaattatgaatgatatttttccacttcatattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
tgttgat putative branch site (score: 40)
tttttccacttcat putative PPT
atttctatgaattatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctatatcttccatttccaattctaggcttcaattatttgttgatgttcatcatttctatgaattatgaatgatatttttccacttcatattttgcagGTATCCACACAATAATGTTCCACCCAATGTTGCTCCAT
- - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaatg