1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacactcgctagcactaacaatattctgggaactatgctgaagttcttggcctgtttcctctgatgattgtcagtatatatttgcccttttctcttggaatttcacacgtcttatttacaaagtattctactaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTTTATGGTTGGGGGTGGAACAAG
species | Oryza sativa |
transcript | LOC_Os04g35570.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTAGTTCCACATAAACTAGAGGCCTTAAAGGATAGCTCTATATCGCAG ATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTTEST: gi|4715299|gb|AU056416.1|AU056416
genomic: ATTTAGTTCCACATAAACTAGAGGCCTTAAAGGATAGCTCTATATCGCAGgtacactcgc ... actaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTT
EST: ATTTAGTTCCACATAAACTAGAGGCCTTAAAGGATAGCTCTATATCGCAG ATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTTEST: gi|29614612|gb|CB619625.1|CB619625
genomic: ATTTAGTTCCACATAAACTAGAGGCCTTAAAGGATAGCTCTATATCGCAGgtacactcgc ... actaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTT
EST: TAAAGGATAGCTCTATATCGCAG ATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTT
genomic: TAAAGGATAGCTCTATATCGCAGgtacactcgc ... actaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTT
cccttttctcttggaatttcacacgtcttatttacaaagtattctactaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTTTATGGTTGGGGGTGGAACAAG
tactaat putative branch site (score: 84)
ttctact CT-rich tract
ttatttacaaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcgctagcactaacaatattctgggaactatgctgaagttcttggcctgtttcctctgatgattgtcagtatatatttgcccttttctcttggaatttcacacgtcttatttacaaagtattctactaatttagATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTTTATGGTTGGGGGTGGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA