1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagttattgtttgccttgttataaggattctaaattaagatcttgtcgaatgcatctatgaaatcagcacattaatcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAGGGGTTTTGGATCCAAAGATGACTGAGAAGCCTACTTCTAGGGCACTGA
species | Oryza sativa |
transcript | LOC_Os04g35080.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|29689056|gb|CB685331.1|CB685331
genomic: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: CAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|29683546|gb|CB679821.1|CB679821
genomic: CAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: CAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|58657777|gb|CK046457.1|CK046457
genomic: CAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAAGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|27554264|gb|CA998164.1|CA998164
genomic: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|44665188|gb|CR278622.1|CR278622
genomic: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: CGGGTACCAGTGGATTACAACAGACCACCAGTGGAG G-TAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|29689055|gb|CB685330.1|CB685330
genomic: CGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: CAGACCACCACCTGAG GGTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|33381394|gb|CF196737.1|CF196737
genomic: CAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAEST: gi|27578162|gb|CB000857.1|CB000857
genomic: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
EST: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAG GTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
genomic: AAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGgttagttatt ... atcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAA
ctaaattaagatcttgtcgaatgcatctatgaaatcagcacattaatcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAGGGGTTTTGGATCCAAAGATGACTGAGAAGCCTACTTCTAGGGCACTGA
tcctttc CT-rich tract
tatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttattgtttgccttgttataaggattctaaattaagatcttgtcgaatgcatctatgaaatcagcacattaatcctttcagGTTAATCTTGTTGAATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAGGGGTTTTGGATCCAAAGATGACTGAGAAGCCTACTTCTAGGGCACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC