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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatccaatcatactccttgtatgacttatttgacatatattacaaagattatttgattttaaacactaggtgactgatgattcttgtttttttcctccccttcagGCACTATTGCAGACTGGGTTCCACCACTCAAGACA

Basic information

species Oryza sativa
transcript LOC_Os04g11820.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgattttaaacactaggtgactgatgattcttgtttttttcctccccttcagGCACTATTGCAGACTGGGTTCCACCACTCAAGACA
                     gactgat  putative branch site (score: 3)
                           tgattcttgttttttt  CT-rich tract
                             attcttgttttttt  TA-rich tract