1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgcttctttattatgtctgccttgtctggatgtgtagtttcctttgatttttgttttcatgtgccatggagataacttcccatatttgtcgctttacagATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGCTACAGCGGGCAGCAGCCAGTGCTATTTCAGCAGCTGCTGTGAAGTCGAA
species | Oryza sativa |
transcript | LOC_Os04g01970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAGCATCATGAGTCCATCCAAACAAGTTGGAGGAAGGGCTACATACAAG ATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGCEST: gi|87027720|gb|CI274284.1|CI274284
genomic: ACAGCAACATGAGTCCATCCAAACAAGTTTGAAGAAGGGCTACATACAAGgtaacttgtt ... cgctttacagATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGC
EST: ACAGCAACATGAGTCCATCCAAACAAGTTTGAAGAAGGGCTACATACAAG ATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGC
genomic: ACAGCAACATGAGTCCATCCAAACAAGTTTGAAGAAGGGCTACATACAAGgtaacttgtt ... cgctttacagATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGC
tgatttttgttttcatgtgccatggagataacttcccatatttgtcgctttacagATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGCTACAGCGGGCAGCAGCCAGTGCTATTTCAGCAGCTGCTGTGAAGTCGAA
agataac putative branch site (score: 15)
tcgcttt putative PPT
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcttctttattatgtctgccttgtctggatgtgtagtttcctttgatttttgttttcatgtgccatggagataacttcccatatttgtcgctttacagATCATAACAGTATTAAGAAAACAGTTGCCGATGATGTCTCCGTACAAAGGCTACAGCGGGCAGCAGCCAGTGCTATTTCAGCAGCTGCTGTGAAGTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-tgcttct
- - - - - - - tgtctgc
- - - - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatgg