1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgtttatgtttgtgctagtacttcatttgaatattctgtagaagtttgcatcttttttttcccttacggttctccttttttttccccctttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATGACTCGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCAT
species | Oryza sativa |
transcript | LOC_Os03g63710.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCAAAGCAGAGAAGAGAAAGAGGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGTGACATGGATEST: gi|86592535|gb|CI253216.1|CI253216
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|66922735|gb|CX109583.1|CX109583
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|29645174|gb|CB650181.1|CB650181
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|86497697|gb|CI140330.1|CI140330
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|86859205|gb|CI277095.1|CI277095
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|88221223|gb|CI221179.1|CI221179
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATEST: gi|29677840|gb|CB674115.1|CB674115
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
EST: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCG GGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
genomic: ATCAAAGCAGAGAAGAGAAAGACGCTCAAATGTCCCTTCAAAAGTTTGCGgtgcgtatta ... tttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGAT
gtttgcatcttttttttcccttacggttctccttttttttccccctttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATGACTCGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCAT
tcttttttttccctta CT-rich tract
atctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttatgtttgtgctagtacttcatttgaatattctgtagaagtttgcatcttttttttcccttacggttctccttttttttccccctttaattcagGGTTCTTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATGACTCGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - tgtttgt
- - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - -ttctgta