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...cgtgtatatctgctgaatcttttggttcacacttctctcacctggagctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
species | Oryza sativa |
transcript | LOC_Os03g63020.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|25798660|gb|CA754621.1|CA754621
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|58694135|gb|CK082822.1|CK082822
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|29663526|gb|CB659801.1|CB659801
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|58656490|gb|CK045170.1|CK045170
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|88324687|gb|CI587656.1|CI587656
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|29644978|gb|CB649985.1|CB649985
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|58692426|gb|CK081113.1|CK081113
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|29613119|gb|CB618132.1|CB618132
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|58675001|gb|CK063688.1|CK063688
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCACTTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|29613394|gb|CB618407.1|CB618407
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAEST: gi|33381171|gb|CF196514.1|CF196514
genomic: AGGAGGTGACTATGGAAAATCACGAGTTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
EST: TTGTTCTTCATTTTTGAAAACATG GAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
genomic: TTGTTCTTCATTTTTGAAAACATGgttggtctca ... cttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAA
agctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
cacttac putative branch site (score: 36)
tcattgtttcttttc putative PPT
ttaaatatttagcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgtatatctgctgaatcttttggttcacacttctctcacctggagctgttaaatatttagcttttcacttactctggtatcattgtttcttttcacagGAATGCAATTTGTATGATGTCATAAGAGAAAGGCAAGCTGCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT