1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccagttgtatttttctttatgatatcatatcttaagacaaaatttgattatttattaactactaagtcatctaaatcgttgttcctgttgtctttgcagATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTT
species | Oryza sativa |
transcript | LOC_Os03g62500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAG ATATGCCGAGCEST: gi|58676493|gb|CK065180.1|CK065180
genomic: GAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGgtcagccctg ... gtctttgcagATATGCCGAGC
EST: GAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAG ATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGT
genomic: GAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGgtcagccctg ... gtctttgcagATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGT
tgattatttattaactactaagtcatctaaatcgttgttcctgttgtctttgcagATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTT
ttcctgttgtcttt CT-rich tract
atttattaactactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccagttgtatttttctttatgatatcatatcttaagacaaaatttgattatttattaactactaagtcatctaaatcgttgttcctgttgtctttgcagATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTT
- - - - - - - - -ttatgat
- - - - - - - - - - - - - - - - - - gacaaaa