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gtgagttacagtgactgatcaacctccattttccatttatccattttgattagtgctattattttgtcctagatttctgcttctcactaacatatttcaatcaacttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCAGCACTACAGAAATCATCAATGTCAAGGGAGGACTATAAGAAAGCTGTT
species | Oryza sativa |
transcript | LOC_Os03g61120.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGA-TAC-TAGTGTTAATGT GCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCEST: gi|29673715|gb|CB669990.1|CB669990
genomic: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGTgtgagttaca ... ttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTC
EST: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGT GCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCEST: gi|24468862|gb|CA305811.1|CA305811
genomic: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGTgtgagttaca ... ttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTC
EST: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGT GCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCEST: gi|86901654|gb|CI310416.1|CI310416
genomic: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGTgtgagttaca ... ttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTC
EST: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGT GCCAACTCTTACTGCTGEST: gi|58608239|gb|CK036272.1|CK036272
genomic: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGTgtgagttaca ... ttatatgtagGCCAACTCTTACTGCTG
EST: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGT GCCAACTCTTACTGCTGGTTCTGTAAAACT
genomic: GGGAAGAATCAGCTGGAAGCTTTGTTATCAAGATTACATAGTGTTAATGTgtgagttaca ... ttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACT
attttgtcctagatttctgcttctcactaacatatttcaatcaacttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCAGCACTACAGAAATCATCAATGTCAAGGGAGGACTATAAGAAAGCTGTT
cactaac putative branch site (score: 12)
taacatatttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacagtgactgatcaacctccattttccatttatccattttgattagtgctattattttgtcctagatttctgcttctcactaacatatttcaatcaacttatatgtagGCCAACTCTTACTGCTGGTTCTGTAAAACTTAACGTTGGGCAATTTGGGTCAGCACTACAGAAATCATCAATGTCAAGGGAGGACTATAAGAAAGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT