1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tcatgaatacaagcttttatcacagatgtcacctctaggaagctcaagattatctaaccagataataacttaaaccggccttgatgattatggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTGATTTG
species | Oryza sativa |
transcript | LOC_Os03g58700.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTEST: gi|29627051|gb|CB632062.1|CB632062
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGT
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTEST: gi|88339082|gb|CI677904.1|CI677904
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGT
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAEST: gi|58664362|gb|CK053048.1|CK053048
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCC-TGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAA
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTEST: gi|58662434|gb|CK051120.1|CK051120
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGT
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTEST: gi|88369738|gb|CI680407.1|CI680407
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGT
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGEST: gi|29634961|gb|CB639970.1|CB639970
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTG
EST: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAG GGCCCTGTTCG
genomic: TTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattca ... tggtttgcagGGCCCTGTTCG
aagattatctaaccagataataacttaaaccggccttgatgattatggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTGATTTG
agataataacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgaatacaagcttttatcacagatgtcacctctaggaagctcaagattatctaaccagataataacttaaaccggccttgatgattatggtttgcagGGCCCTGTTCGAGAGAAGGAGAAGCGGGGAAAAGAAAGAAATGAACTGCGTGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg