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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatgaccatttgttactttcccactcctttgtaactgtaaaaatgttcatttttgttttttttttctcatgtgatatatccaactttatagGGAAATCAACTGCTAAAGGACAGGAATAAAACCAGAAAAAAGTGTCCACGAGGGGATGAGTGCCTTTCTTCTTCATCTCCAATTCTGAACAGGACTGCTG

Basic information

species Oryza sativa
transcript LOC_Os03g56234.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g56234.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G085427_T02 (Zea mays), 3'ss of exon 6
gtgcatgaccatttgttactttcccac--tcctttgtaactgtaaaaatgttcatt-tttgttttttttttctcatgtgatatatccaactttat-----agGGAAATCAACTGCTAAAGGACAGGAATAAAACCAGAAAAAAGTGTCCACGAGGGGATGAGTGCCTTTCTTCTTCATCTCCAATTCTGAACAGGACTGCTG
          | ||| |   | ||||   ||||||     |   |||| ||  |   ||| ||| || |||||||||  || | ||    ||| |     |||| || ||||||||||||||||| |||||  |||| | |||| || |||||| ||||  ||||||  ||||| ||||||||||| | | ||   || |||
-------gtgagttgctttgtccccatgttccttttctcgttataaaacgtcgacagtttatttcttctttctcatgctatgtgtctccttttgtttgctagGGGAAACAACTGCTAAAGGACAGAAATAAGTCCAGGAGAAAGCGTTCACGAGTGGATATGTGCCTACCTTCTCCATCTCCAATTATCAGCAAAGCTCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58666194|gb|CK054880.1|CK054880
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACATTCGTAGAAGCATTG                         GGAAATCAACTGCTAAAGGACAGGAATAAAACCAGAAAAAAGTGTCCACGA
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACATTCGTAGAAGCATTGgtgcatgacc ... aactttatagGGAAATCAACTGCTAAAGGACAGGAATAAAACCAGAAAAAAGTGTCCACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaaatgttcatttttgttttttttttctcatgtgatatatccaactttatagGGAAATCAACTGCTAAAGGACAGGAATAAAACCAGAAAAAAGTGTCCACGAGGGGATGAGTGCCTTTCTTCTTCATCTCCAATTCTGAACAGGACTGCTG
     aatgttcatttttgtt  TA-rich tract