1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aacattagagtccagttgattagttaatgattttgctggcaattgtcatggtcatgctactaattcaaattctgaaactgcttgtgtataaactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAG
species | Oryza sativa |
transcript | LOC_Os03g55280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|86417412|gb|CI031621.1|CI031621
genomic: AAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|87010136|gb|CI279233.1|CI279233
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|89186248|gb|CI262080.1|CI262080
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: AGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|86258502|gb|CI064855.1|CI064855
genomic: AGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|41881827|gb|BX927612.1|BX927612
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|87029218|gb|CI276486.1|CI276486
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|13805857|gb|AU181226.1|AU181226
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: CACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATEST: gi|88974879|gb|CI023150.1|CI023150
genomic: CACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
EST: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAG GATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
genomic: GTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGgttagcataa ... aactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGAT
tcatggtcatgctactaattcaaattctgaaactgcttgtgtataaactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAG
tactaat putative branch site (score: 33)
tactaattcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacattagagtccagttgattagttaatgattttgctggcaattgtcatggtcatgctactaattcaaattctgaaactgcttgtgtataaactctgaagGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAG
- - - - - - - gttgatt
- - - - - - - - - - - - - - - - -tgctggc
- - - - - - - - - - - - - - - - - - - - - -tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttg