1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttggtagaacactgttgtagtttgattgtccctccttgcccttgcttccatttagatttcatatatttggtctgatagtaacgttgacttctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCTGACCCTTACGGAGGTTGGTCATGCGAAGGATGATTTGATCCCAAAAAAT
species | Oryza sativa |
transcript | LOC_Os03g51900.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAG CGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCTEST: gi|33675851|gb|CF304090.1|CF304090
genomic: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAGgtgaaatttg ... ctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCT
EST: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAG CGCTGATATTGAGAAACTGACEST: gi|58659948|gb|CK048628.1|CK048628
genomic: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAGgtgaaatttg ... ctttttacagCGCTGATATTGAGAAACTGAC
EST: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAG CGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCTEST: gi|58679100|gb|CK067787.1|CK067787
genomic: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAGgtgaaatttg ... ctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCT
EST: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAG CGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCT
genomic: CCACATATCCCAAGAAGCTGCCAGTCCATCCTGATGTCTGCAACGTCAAGgtgaaatttg ... ctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCT
ttccatttagatttcatatatttggtctgatagtaacgttgacttctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCTGACCCTTACGGAGGTTGGTCATGCGAAGGATGATTTGATCCCAAAAAAT
cttctttttac CT-rich tract
tttagatttcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtagaacactgttgtagtttgattgtccctccttgcccttgcttccatttagatttcatatatttggtctgatagtaacgttgacttctttttacagCGCTGATATTGAGAAACTGACTAAGCTACTTCTGCACAACCCTTTTATTCTGACCCTTACGGAGGTTGGTCATGCGAAGGATGATTTGATCCCAAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -ctgttgt
- - - - - - - - - - - tgattgt
- - - - - - - - - - - - - - - - -ccttgcc