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...tgcgttctgcattgttttggatgtagtactctttttttagatatgcaataatatgagttatgtaaaggttgtttatttataattttcttaaatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTGTATCACACAGAACCATTGCAAGACATTGAGAAGATTTTTGCAAAG
species | Oryza sativa |
transcript | LOC_Os03g50850.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|29664558|gb|CB660833.1|CB660833
genomic: ACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|66913816|gb|CX100664.1|CX100664
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|29664554|gb|CB660829.1|CB660829
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTEST: gi|2427752|gb|C72215.1|C72215
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
EST: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAG GCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
genomic: GGCACCTTTTCTCATGTGGAGAAGATGGCACAAAATCTGAAAACCTCCAGgtatgctgta ... aatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCT
caataatatgagttatgtaaaggttgtttatttataattttcttaaatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTGTATCACACAGAACCATTGCAAGACATTGAGAAGATTTTTGCAAAG
ttatgtaaaggttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgttctgcattgttttggatgtagtactctttttttagatatgcaataatatgagttatgtaaaggttgtttatttataattttcttaaatatgacagGCAATACAGAGAATACCTGGAGCATATTTTGGAGTATCTGACATCATTTCTGTATCACACAGAACCATTGCAAGACATTGAGAAGATTTTTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - ttctgca
- - - - - - - - ttggatg
- - - - - - - - - - - - - - - - - - - - atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt