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...tatatgcttgaatatttttcccctatagattattgtcttctgctagttctatttggatttgcattttggttgattaagactcttcaatatgacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGGCGGTTTTGGGCAGATAGCAACCTAAAAAGCAAGTTCTGGGGTCGCTCCA
species | Oryza sativa |
transcript | LOC_Os03g49770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAG GTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGGEST: gi|27546683|gb|CA764876.2|CA764876
genomic: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAGgttttgtctg ... gacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGG
EST: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAG GTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACCGGGTGGEST: gi|66924363|gb|CX111211.1|CX111211
genomic: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAGgttttgtctg ... gacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGG
EST: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAG GTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACCGGGTGGEST: gi|163927376|gb|EG709904.1|EG709904
genomic: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAGgttttgtctg ... gacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGG
EST: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAG GTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGG
genomic: CCTATGAAGCAGATTATCCAGACAAAGGCCTCCGTTTTTTCTCAGAAAAGgttttgtctg ... gacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGG
gttctatttggatttgcattttggttgattaagactcttcaatatgacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGGCGGTTTTGGGCAGATAGCAACCTAAAAAGCAAGTTCTGGGGTCGCTCCA
ggttgat putative branch site (score: 12)
ttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgcttgaatatttttcccctatagattattgtcttctgctagttctatttggatttgcattttggttgattaagactcttcaatatgacttgccagGTTAGTCACCATCCTATGGTGGTTGCATGCCATTGTGAGGGAACTGGGTGGCGGTTTTGGGCAGATAGCAACCTAAAAAGCAAGTTCTGGGGTCGCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- -atgcttg
- - - - - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatt