Sequence
atgc intronic sequence ATGC exonic sequence...agtctcacccttaagcagtggctaggactattttggtgattatctggctagacctttagaagtaagcatgaataatatatcctctgcctcatatgtgcagTTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAG
Basic information
species | Oryza sativa |
transcript | LOC_Os03g49730.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G457881_T03 (Zea mays), 3'ss of exon 5
----agtctcacccttaagcagtggctaggactattttggtgattatctggctagacctttagaagtaagcatgaataatatatcctctgcctcatatgtgcagTTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAG
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tccatatagtacttcagaatagctgttaggattaattggcaggcccaatgacgtgtgtcgatgaattaagcatgaattattgattctc----acatatatgcagTTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAG
upper sequence: LOC_Os03g49730.3 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv18s0001g03730.t01 (Vitis vinifera), 3'ss of exon 5
---agtctcacccttaagcagtggctaggactattttggtgattatctggctagacctttagaagtaagcatgaataatatatcctctgcctcatatg--tgcagTTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAG
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atttatttattttttcccctgaaatctga--tacttttgcaa--agggagattgatgtct-gatgaatttttgtctgaaatatgatccttctcaattgcctgcagCTTGCATGCAATGCTCATACCATTTGTGATGGTGAACTAAGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58669228|gb|CK057914.1|CK057914EST: TTCCTTCATTCGAGCTTGATCTTAAGGAAATTACACATACCTTTTCCAAG TTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGTCCCTTGGG
genomic: TTCCTTCATTCGAGCTTGATCTTAAGGAAATTACACATACCTTTTCCAAGgtaatgctac ... atatgtgcagTTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctagacctttagaagtaagcatgaataatatatcctctgcctcatatgtgcagTTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAG
atgaataatatat TA-rich tract