1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaatatcaagtttgcattttgcaatataggtgcatataacatatttacttgtcacagtctgtgcaaggagcacgtataatttttcttcatttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGAGTCAAGAACTGGTTTACGTTTAATGAGCCAAGGATAGTAGCAGCACTT
species | Oryza sativa |
transcript | LOC_Os03g49610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTGTGTTTCAAGACATATGGCGATCGEST: gi|58670861|gb|CK059547.1|CK059547
genomic: TTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT AGGTGTATTTTCGGACTATGCTGAEST: gi|58673207|gb|CK061893.1|CK061893
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGA
EST: TTGCCACCTTCCAGAAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58666291|gb|CK054977.1|CK054977
genomic: T-GC-AC-TTC-AGAAAAA-GTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58662636|gb|CK051322.1|CK051322
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT AGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58672509|gb|CK061195.1|CK061195
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58653737|gb|CK042417.1|CK042417
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|117229561|gb|CT859875.1|CT859875
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58671028|gb|CK059714.1|CK059714
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58663559|gb|CK052245.1|CK052245
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGCAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58664913|gb|CK053599.1|CK053599
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAACGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58678605|gb|CK067292.1|CK067292
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAGAAATTGT TGGTGTATTTGCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58654026|gb|CK042706.1|CK042706
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58678530|gb|CK067217.1|CK067217
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGEST: gi|58670130|gb|CK058816.1|CK058816
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGT TGGTGTATTTTCGGACTATGCTGAGTTTGGTTTCAAGACATATGGCGATCGEST: gi|58612072|gb|CK039784.1|CK039784
genomic: CCACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCG
EST: CACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAAGGTTGT TGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATC
genomic: CACTTGCACTTCAGAAAAAGTATGAAGGCTGGTTAAGCCCAAAA-ATTGTgtaagtcgta ... ttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATC
tacttgtcacagtctgtgcaaggagcacgtataatttttcttcatttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGAGTCAAGAACTGGTTTACGTTTAATGAGCCAAGGATAGTAGCAGCACTT
tttttcttcatttttt CT-rich tract
tataatttttcttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatcaagtttgcattttgcaatataggtgcatataacatatttacttgtcacagtctgtgcaaggagcacgtataatttttcttcatttttttgcagTGGTGTATTTTCGGACTATGCTGAGTTTTGTTTCAAGACATATGGCGATCGAGTCAAGAACTGGTTTACGTTTAATGAGCCAAGGATAGTAGCAGCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -gtttgca
- - - - - - - - ttttgca
- - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcaag