Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttgtctagctaaatgcagcatcctgtatctctggcatcactagctgtataagtaacactctgaagtctggattatcttcatactacttgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCGTGTCAAGCACTGGTTTACATTTAATGAGCCAAGGATAGTAGCACTTCTT

Basic information

species Oryza sativa
transcript LOC_Os03g49600.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 5
------------------------------------------------------ctgttgtct----agctaaatgcagcatcctgtatctctggcatcactagctgtataagtaacactctgaagtctggattatcttc--atactacttgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCGTGTCAAGCACTGGTTTACATTTAATGAGCCAAGGATAGTAGCACTTCTT
                                                       |||| ||     ||    |  ||  |    | |||||| |  ||||  | | || || |   | |   |  |     |||| |    |||| | ||||| ||||||||  | || || || || || ||||||||||| |||||||  ||| |||| || ||||||||||||||||| |||||||||||||||||||| || |||
gtaagtcagtctaaagatatatctggtcatgttattaacgtgtttcgactttctgtgttttcccgaaagaaggacacacaacatagaatctctagtttcacatgatatagaactggaaataccagattatacttatatatgtatacaatttgttttgtagGGACTTGTTTACAGACTATGCTGACTTCTGTTTTAAGACCTACGGCGATCGCGTAAAGCACTGGTTTACATTCAATGAGCCAAGGATAGTAGCGCTACTT

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AC217401.3_FGT001 (Zea mays), 3'ss of exon 5
-----ctgttgtctagctaaatgcagcatcctgtatctctggcatcactagctgtataagtaacactctgaagtctggattatcttcatactacttgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCGTGTCAAGCACTGGTTTACATTTAATGAGCCAAGGATAGTAGCACTTCTT
         ||||||  || ||||        | || | | | |  |    |  | |     | |   |  | |      |||||  |||| |  |||| |||||| | || ||||| || || || ||||||||||| ||||| |||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
ttgttgcagtgtctatatatatgctttggaagg-atgttttgtaggaacgccaatctttaccatatctt--atttatatctatctctatacga--tgttttgtagGAAACTGTTCACAGACTATGCCGACTTCTGTTTTAAGACTTTTGGCGACCGTGTAAAGCATTGGTTTACATTCAATGAGCCAAGGATAGTAGCACTACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667348|gb|CB663623.1|CB663623
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|5004341|gb|AU069490.1|AU069490
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33793788|gb|CF322778.1|CF322778
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58676021|gb|CK064708.1|CK064708
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33797376|gb|CF324550.1|CF324550
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189009|gb|AU183652.1|AU183652
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGG-AGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|32948487|gb|BP185059.1|BP185059
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218501129|gb|FG969556.1|FG969556
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58686123|gb|CK074810.1|CK074810
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTG
EST: gi|58656764|gb|CK045444.1|CK045444
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTG
EST: gi|29672036|gb|CB668311.1|CB668311
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58678675|gb|CK067362.1|CK067362
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGAGTCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGA-TCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|33381892|gb|CF197235.1|CF197235
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|88212028|gb|CI211668.1|CI211668
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACTTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58682006|gb|CK070693.1|CK070693
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAG
EST: gi|58680064|gb|CK068751.1|CK068751
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTT
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTT
EST: gi|29657770|gb|CB654045.1|CB654045
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|86898371|gb|CI292293.1|CI292293
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|15852844|gb|BI805640.1|BI805640
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTT-GGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218498123|gb|FG968220.1|FG968220
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|218482013|gb|FG963445.1|FG963445
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAGGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29643770|gb|CB648777.1|CB648777
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|428803|gb|D24959.1|D24959
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58675601|gb|CK064288.1|CK064288
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTT
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTT
EST: gi|29638180|gb|CB643189.1|CB643189
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58685477|gb|CK074164.1|CK074164
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCG
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     CCCCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58685224|gb|CK073911.1|CK073911
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29678657|gb|CB674932.1|CB674932
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58668191|gb|CK056877.1|CK056877
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|8860126|gb|AU097444.1|AU097444
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTANGCGGACTTCTGNTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58682160|gb|CK070847.1|CK070847
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58679549|gb|CK068236.1|CK068236
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTGCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29629596|gb|CB634605.1|CB634605
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189007|gb|AU183650.1|AU183650
EST:     CTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
genomic: CTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGG-Cgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATC
EST: gi|33795297|gb|CF323520.1|CF323520
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58681508|gb|CK070195.1|CK070195
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAAGTC
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAA-TC
EST: gi|58683209|gb|CK071896.1|CK071896
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|14189008|gb|AU183651.1|AU183651
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|700314|gb|D46605.1|D46605
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29667382|gb|CB663657.1|CB663657
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|58660539|gb|CK049219.1|CK049219
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29638848|gb|CB643857.1|CB643857
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
EST: gi|29671916|gb|CB668191.1|CB668191
EST:     CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGC                         GGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG
genomic: CCTCTTGCGCTTGAGAAGAAGTACGGAGGCTGGTTGAATGCAAAAATGGCgtaagtcaaa ... tgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtataagtaacactctgaagtctggattatcttcatactacttgttctgtagGGATCTATTCACGGAGTACGCGGACTTCTGTTTCAAGACCTTTGGCAATCGTGTCAAGCACTGGTTTACATTTAATGAGCCAAGGATAGTAGCACTTCTT
       aagtaac  putative branch site (score: 2)
                                           cttgttct  putative PPT
     ataagtaa  TA-rich tract