1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgttgtagcttaaatactattgccattttatgccatcactagtttgcttcagttttgcttattctaattgcattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGAATGTTGTTATGCCTCCTCTGCTCCAGTCTGCTCAGCTTAAACCAGATG
species | Oryza sativa |
transcript | LOC_Os03g49420.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAA GCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGEST: gi|29681490|gb|CB677765.1|CB677765
genomic: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAAgtatgttgta ... cattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATG
EST: CTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAA GCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGEST: gi|29679231|gb|CB675506.1|CB675506
genomic: CTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAAgtatgttgta ... cattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATG
EST: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAA GCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGEST: gi|29629840|gb|CB634849.1|CB634849
genomic: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAAgtatgttgta ... cattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATG
EST: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAA GCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATG
genomic: AAGGATCTCAGATGGAGGCTGATGACCCTATAACAAGTTACATGCTGCAAgtatgttgta ... cattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATG
ttttatgccatcactagtttgcttcagttttgcttattctaattgcattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGAATGTTGTTATGCCTCCTCTGCTCCAGTCTGCTCAGCTTAAACCAGATG
ttctaat putative branch site (score: 2)
cattttct putative PPT
ttattctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtagcttaaatactattgccattttatgccatcactagtttgcttcagttttgcttattctaattgcattttctagGCATGGGCGAGATTGTGTAAATGCCTTGGTCAGGACTTCTTACCATACATGAATGTTGTTATGCCTCCTCTGCTCCAGTCTGCTCAGCTTAAACCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG