Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatagagcttcactgtgtcctctcctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG

Basic information

species Oryza sativa
transcript LOC_Os03g47770.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G116840_T03 (Zea mays), 3'ss of exon 6
gttatagagcttcactgtgtcctctcctgtttaaatgg-agatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
|||| | |  ||| ||   ||  ||  |||| || |||  | || ||| | ||||   | || ||      |         |||||||||| || || || |||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||  ||||||| ||
gttacatattttctctacatcacct--tgttgaattggtgggtcttgcttttgactgcaatacattaccgat---------tgcagCAACGCCCAGCTGATAATGATCGCTATGTCAAGAACTGTCGCAATGGGAGGTCTCCGAAAGAGACCAGGTGGTGGTTCCATGATGACACCGTGTGATCGG

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G148130_T03 (Zea mays), 3'ss of exon 5
gttatagagcttcactgtgtcctctcctgtttaaatgg-agatcatgcat-ctgaccatattatatgtttattatatgttggt-gcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
|||| | |  | | ||   |   ||  |||| ||  ||  | || ||| | |||||   | || ||       || |   | | ||||||||| || ||||| || |||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||| ||||| ||||  ||||||| ||
gttacatatttcctctacatatcct--tgttcaatcggtgggtcttgctttctgactgcaatacatac-----atgtaccgattgcagCAACGCCCAGCCGATAACGATCGCTATGTCAGGAACTGTCGCAATGGGAGGTCACCAAAGGAGACCACGTGGTGGTTCCATGACGACACTGTGTGATGGG

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA01G37480.1 (Glycine max), 3'ss of exon 5
---------------gttatagagcttcactgtgtcctc---tcctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
                 |   ||  ||   |  ||| |     | |  | ||||||   ||||   | || |   || |    ||| ||   |  |   ||||||||| ||||  || ||||| |||||||| | ||||||| | ||||| || || || |||||||| ||||||||||| |||||||||||||| | ||   
attatttaagattctactggtgaatttaggtaggtcattgatccatcatcaaatgggtgtcat---tttggcttaataactcatttcttgatttctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATAATAAA

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA11G07810.1 (Glycine max), 3'ss of exon 5
--------gttatagagcttcactgtgtcctctcctgtttaaatggag-atcatg-----catctgaccatattatatgtttattatatgttggtg-cagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
         ||  |||   |    |||   |    |   | |  |    ||||||     ||| |   | || ||  | |||| | ||| |   || |||||||| ||||  || ||||| |||||||| | ||||||| | ||||| || || || |||||||| ||||||||||| |||||||||||||| | ||   
tggttattatttaagattcttcaggtgaatttaggtaggtcatcgatccatcatgggtgtcatttcggcttaataactctttactttatttctttggcagCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCACCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATAATAAT

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT1G45050.1 (Arabidopsis thaliana), 3'ss of exon 5
-----------gttatagagcttcactgt------gtcctc-----tcctgtttaaatggagatcatgcatctgaccatatta-tatgtttattat---atgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
            |  | | | ||| || |      ||   |     | ||||  |    ||| || || | || |  |||| | | ||||| ||||      ||  |||||||||| ||||| || || ||||| ||||| | ||||||    ||||||||||| || |||||||| ||||||||||| ||||| ||||| || ||||   
gttctttcttcttcttcgtgtttccctattgacaagttacccaaagtactgtgaattatgaggtc-tgaaactaagaatatcaatgtgttttttattccgccttattgcagCAACGCCCTGCGGATAACGATCGTTATGTGAAGAACTGTAAGAATGGGAGGTCTCCTAAGGAGACGAGGTGGTGGTTCCATGACGACAAGGTTTGATGCA

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv04s0023g02620.t01 (Vitis vinifera), 3'ss of exon 5
-------------gttatagagcttcactgtgtcctctc--ctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
             |  ||     |||  | | | || |   |||||| | |    |    |||   ||         |||  | ||  |  |   |||||||||||||||  || ||||| || ||||| ||||||||| | ||||| || || || |||||||||||||||||||| ||||| || ||||| | ||| |
gaatatcagagaggcaatgagttttcttttttttcttttttctgttttattctttaaatggcaagggattcagcctgatgcattttgaacttgtatgcagCAACGTCCTGAAGATAATGACCGTTATGTGAGGAACTGCAGGAATGGCAGATCCCCCAAGGAGACCAGGTGGTGGTTCCATGACGATAAAGTCTAATTTG

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv18s0001g13180.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------gttatagagcttcactgtgtcct--------ctcctgtttaaatggagatcatgc--atctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
                              || || | |    || | | ||        ||  | | |   |  ||   ||     | |||    ||||    |   || | |  | ||||||||||| ||||| || ||||| |||||||| |  || || || ||||| || || || |||||||| || |||||||| |||||||| ||||||| || | 
gtttggttcaaattgtcaaagttttaagttttttaaacccctcctttcttcttaattttgcttttatctttttccagcctattttagtgtgagagcattactcatgagttttttcattgtgcagCAACGCCCTGCAGATAATGACCGCTATGTGAAAAATTGTCGGAATGGCAGATCTCCCAAGGAGACTAGATGGTGGTTCCATGATGATAAAGTGTAATAGA

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 3'ss of exon 5
---------gttatagagcttcactgt----gtcctctcctg----tttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
          |  ||| ||   | |||    |    | ||||     | || ||| | |  || ||   | ||    | || ||   ||| || ||   |||    | ||  | ||  ||||||  |||||  |||||||||| ||||| || ||||| ||||| ||  |||||||||| || ||||||||||| |||    
cggtgacatctcgtagtgcacaagtgtaaagggatacccctgatacctgaagtggtggt--tgtattgtatcactacaaatattgcgtatgtggtgcaacagGCGAGACCACCTGATGATGATCAGTATGTGCGGAACTGCCGAAATGGAAGATCGCCCAAGGAAACTCGGTGGTGGTTCCACGATGACAAAGTATGA----

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: EFJ27071 (Selaginella moellendorffii), 3'ss of exon 5
gttatagagcttcactgtgtcctctcctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
                      | ||  ||   ||      || | |    |  |  ||   || |    |     ||| | |||    | ||  | || || |||||||| ||| ||||||||||||| ||| | ||||| || || || ||||||||||| || |||||||| ||||||   |
---------------------gtttctagt---aacttgtttccttccctcg--cgcatctcatctcacatccgctttgatccagATGAGGCCACCGGATAACGATCGCTACGTCCGGAACTGCCGCAACGGGCGATCGCCCAAAGACACGAGGTGGTGGTTCCACGATGACAAGGTGTGAGATG

upper sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 5
lower sequence: EFJ21480 (Selaginella moellendorffii), 3'ss of exon 5
gttatagagcttcactgtgtcctctcctgtttaaatggagatcatgcatctgac-catattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
                             ||  | | |      | | |||  | |  ||   || |    |     ||| | |||    | ||  | || || |||||||| ||| ||||||||||||| ||| | ||||| || || || ||||||||||| || |||||||| ||||||   |
---------------------------gtttctagtagcttgtttccttctcgcgcgcatctcatctcacatccgctttgatccagATGAGGCCACCGGATAACGATCGCTACGTCCGGAACTGCCGCAACGGGCGATCGCCCAAAGACACGAGGTGGTGGTTCCACGATGACAAGGTGTGAGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86506933|gb|CI149566.1|CI149566
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88996042|gb|CI037333.1|CI037333
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88205530|gb|CI205379.1|CI205379
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|8859712|gb|AU097030.1|AU097030
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88988979|gb|CI040706.1|CI040706
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88503813|gb|CI431319.1|CI431319
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88480382|gb|CI417653.1|CI417653
EST:     TTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCNACAATGATCGCTATTTCAGGAACTNCCGCAATGGGAGG
genomic: TTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88469861|gb|CI407132.1|CI407132
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|89177790|gb|CI390969.1|CI390969
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88479613|gb|CI416884.1|CI416884
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|33813694|gb|CF332734.1|CF332734
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|87034301|gb|CI188925.1|CI188925
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88483922|gb|CI421193.1|CI421193
EST:     TGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: TGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|86432724|gb|CI086335.1|CI086335
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88434806|gb|CI549003.1|CI549003
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88476130|gb|CI413401.1|CI413401
EST:     TTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: TTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88206195|gb|CI206044.1|CI206044
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88429510|gb|CI551575.1|CI551575
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|88413273|gb|CI523834.1|CI523834
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTNCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
EST: gi|11565148|gb|AU165784.1|AU165784
EST:     GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAG                         CAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG
genomic: GTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 62 (upstream exon), 58 (downstream exon)
Score: 17

ATATATTGTATGACTCGTGGTCACCGGCGATGACCGTTAGTTCTGTTTGTATCAGTATCTTGTCCATGTTGTCAAGCTCACCAGCAAAGgttatagagc ... gttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG
                 atctgac  putative branch site (score: 17)
                         atattatatgtttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttatagagcttcactgtgtcctctcctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagCAACGTCCTGCCGACAATGATCGCTATGTCAGGAACTGCCGCAATGGGAGGTCGCCGAAGGAGACCAGGTGGTGGTTTCATGATGACAAAGTGTGATTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG