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...gtataagttcaacgaactccatatgcattatttcttgtctaaagaatatgctcacctgaacatgttgatctgactggataagcttcctttggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAAAATCCTCTCTCAGGACAAGGAGTACTTTGCTGAACTTGCTGTTGATGC
species | Oryza sativa |
transcript | LOC_Os03g42220.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTAGAAACGC-TTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAEST: gi|66918817|gb|CX105665.1|CX105665
genomic: GCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
EST: GAAACGC-TTGCTGGAGAGGA-CATGGAC-ACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACANTTG-CATGACTACACTTAGTTCAEST: gi|218488070|gb|FG946099.1|FG946099
genomic: GAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACA-TTGCCATGACTACACTTAGTTCA
EST: AAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAEST: gi|88422879|gb|CI615179.1|CI615179
genomic: AAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
EST: TGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAG ATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
genomic: TGCTAGAAACGCTTTGCTGGAGAGGACCATGGACAACAAAGAAAATATAGgtaactatgt ... ggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAA
atatgctcacctgaacatgttgatctgactggataagcttcctttggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAAAATCCTCTCTCAGGACAAGGAGTACTTTGCTGAACTTGCTGTTGATGC
cttcctttg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataagttcaacgaactccatatgcattatttcttgtctaaagaatatgctcacctgaacatgttgatctgactggataagcttcctttggatctgcagATAAGTTTAGATCAGATCTCATGAACATTGCCATGACTACACTTAGTTCAAAAATCCTCTCTCAGGACAAGGAGTACTTTGCTGAACTTGCTGTTGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - -caacgaa
- - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - -atatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - cacctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgg