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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacttttgaggggatgtttggtacggttgcaaaccaaaatggacgtacattttttaaggacacggaattctgtgtgttttacacaattttttttttcagTGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAG

Basic information

species Oryza sativa
transcript LOC_Os03g39640.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39640.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 5
--aaacttttgagggga-tgtttggtacggttgcaaaccaaaatggacgtacattttttaaggacacggaattctgtgtgttttacaca------atttttttttt-----cagTGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAG
  |  | |  ||   || | ||  || |   |  |||   |   |   |    |||  |        |  | |    |    ||||  |      |||||| ||||     ||||||||||||||||||||| |||||| ||||| ||||| |||| |||||||| || ||||| ||||| | ||| || || |||
gtatgcatcagattagagttttctgtccaaatcaaaatatattagtgtgcttttttccttgttgagagagagttaacgcaacttacctatagtctatttttcttttggtgccagTGAACCATATGTTACTGAAGATGAATTGAAACTAATGCTACGTGGTGCAGAATTAAGTGGGGCTATAGAAGAGGAAGAGCAG

upper sequence: LOC_Os03g39640.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 5
------------aaacttttgaggggatgtttggtacggtt--gcaaaccaaaatggacgtacattttttaaggacacggaattctgtgtgtt--ttacacaatttttttttt------cagTGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAG
              |   |||     || |||| | |||||  |   |     |||      | ||  | || |  |    || ||   |||   |         |||||| |      ||||||||||||||||||||| |||||  ||||| | ||| || |||||||||| |||||||| || |||| |||||| || |||
gtatgcatcagtctagacttgttttaatatttgattcggtttggtggattgtcatgccttctccttggtaaaagttagcagatcctagatgtaaatcttgtggccttttttgtgtgtgtcagTGAACCATATGTTACTGAAGATGAGTTGAAACTGATGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacattttttaaggacacggaattctgtgtgttttacacaattttttttttcagTGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAG
                                       caattttttttttc  CT-rich tract
                              tgttttacacaatttt  TA-rich tract