1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attgcattcatcttgtatcctgcgtatttaatgtatctgagttgttgcttggttgatcattctgtaaccgtaaaacatatctaatggaatatttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCTGTGAGCAAAATTTTTATATCAG
species | Oryza sativa |
transcript | LOC_Os03g36790.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAG GTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCTEST: gi|218497390|gb|FG957738.1|FG957738
genomic: AGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAGgttggtgctt ... atttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCT
EST: AGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAG GTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCTEST: gi|27547069|gb|CA765194.2|CA765194
genomic: AGCTAAGGATTATATACATGGCAGTTAATGGTGTTATATATGTAATCCAGgttggtgctt ... atttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCT
EST: GGTGTTATATATGTAATCCAG GTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCT
genomic: GGTGTTATATATGTAATCCAGgttggtgctt ... atttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCT
tgcttggttgatcattctgtaaccgtaaaacatatctaatggaatatttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCTGTGAGCAAAATTTTTATATCAG
atctaat putative branch site (score: 3)
taaaacatatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcattcatcttgtatcctgcgtatttaatgtatctgagttgttgcttggttgatcattctgtaaccgtaaaacatatctaatggaatatttgtgcagGTTTGTATTTGGATATACCTTGGGACAAATGATAGTCCTCTGCTAGAGCCTGTGAGCAAAATTTTTATATCAG
- tgcattc
- - - - - - - - atcctgc
- - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaca