1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taatcaataacttgctgctacccttagtgttgccatttgtgcagtctgtatgtcacacaatgcttcaacaaaagcatataactagagtctatacttgcagGTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCCAGGGAAATCCAATGCAG
species | Oryza sativa |
transcript | LOC_Os03g31010.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACGTACTTCCTTTTGGAGATGGGGCACATAATTTTGGTGATAATTCTG GTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCCEST: gi|58680718|gb|CK069405.1|CK069405
genomic: GGACGTACTTCCTTTTGGAGATGGGGCACATAATTTTGGTGATAATTCTGgtctgtttct ... atacttgcagGTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCC
EST: GGACGTACTTCCTTTTGGAGATGGGGCACATAATTTTGGTGATAATTCTG GTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCC
genomic: GGACGTACTTCCTTTTGGAGATGGGGCACATAATTTTGGTGATAATTCTGgtctgtttct ... atacttgcagGTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCC
ctgtatgtcacacaatgcttcaacaaaagcatataactagagtctatacttgcagGTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCCAGGGAAATCCAATGCAG
atataac putative branch site (score: 21)
atataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcaataacttgctgctacccttagtgttgccatttgtgcagtctgtatgtcacacaatgcttcaacaaaagcatataactagagtctatacttgcagGTGTGTACCCCAAAAATACCTCAACATTTGTACCTAATGTTGTCAACGCCCAGGGAAATCCAATGCAG
- - caataac
- - - - - - tgctgct
- - - - - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagc