1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctctctctctctctctctctagcctctcgcttactcgctctatatgcacatacacaattttgatatatctgtttaaaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCTTCATTTGCAGAAGTAGGCAAAGTATCTGGTTGTAATATCTAGACCTAT
species | Oryza sativa |
transcript | LOC_Os03g24380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTTGTACCCTCCCCCATCCEST: gi|86527805|gb|CI168011.1|CI168011
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88450244|gb|CI542005.1|CI542005
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|18386081|gb|BM419280.1|BM419280
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|29639181|gb|CB644190.1|CB644190
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|14714308|gb|AU198231.1|AU198231
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|8527832|gb|AU092647.1|AU092647
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88969143|gb|CI382692.1|CI382692
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|25807079|gb|CA763033.1|CA763033
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTTGACTGCGACCAGTCCCTTGTTTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTTGTACCCTCCCCCATCCEST: gi|33680364|gb|CF308603.1|CF308603
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|7378306|gb|AU088577.1|AU088577
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCCGCTCCGAGGATTAGATCCCGTACCCTCCCCCATEST: gi|88448866|gb|CI557938.1|CI557938
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGG-CGCT-CGAGGATTAGATCTCGTACCCTCCCCCAT
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88296846|gb|CI540198.1|CI540198
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88471220|gb|CI408491.1|CI408491
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88296988|gb|CI542700.1|CI542700
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGGCTCGAGGAGTAGATCTCGTACCCTCCCCCATCEST: gi|88507237|gb|CI434743.1|CI434743
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGC-GCTCGAGGATTAGATCTCGTACCCTCCCCCATC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|30227513|gb|CB965405.1|CB965405
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTTGTACCCTCCCCCATCCEST: gi|86868821|gb|CI334193.1|CI334193
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88517887|gb|CI444776.1|CI444776
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|8528179|gb|AU092994.1|AU092994
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|3762605|gb|AU029357.1|AU029357
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88291772|gb|CI539943.1|CI539943
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|8528215|gb|AU093030.1|AU093030
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88438224|gb|CI538583.1|CI538583
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88295754|gb|CI532715.1|CI532715
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|29639182|gb|CB644191.1|CB644191
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88408928|gb|CI554250.1|CI554250
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88376727|gb|CI538031.1|CI538031
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88447126|gb|CI531369.1|CI531369
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: CTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCEST: gi|88457806|gb|CI539602.1|CI539602
genomic: CTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
EST: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAG AAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
genomic: GCAAAGTCATTAACAGATACTCGACTGCGACCAGTCCCTTGTCTTTTGAGgtctctctct ... aaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCC
ttactcgctctatatgcacatacacaattttgatatatctgtttaaaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCTTCATTTGCAGAAGTAGGCAAAGTATCTGGTTGTAATATCTAGACCTAT
aattttgatatatctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctctctctctctctctctagcctctcgcttactcgctctatatgcacatacacaattttgatatatctgtttaaaatgtacagAAAGACATCCTGAAGGCGCTCGAGGATTAGATCTCGTACCCTCCCCCATCCTTCATTTGCAGAAGTAGGCAAAGTATCTGGTTGTAATATCTAGACCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG