1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gcacttctggttggcaacaccagaagatagatgatatgcagtgtgttccttcatatagcatctatgctgttctaacaaaagtttcaacttggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAA
species | Oryza sativa |
transcript | LOC_Os03g21950.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGGTTGGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|42592105|gb|CK738591.1|CK738591
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAEST: gi|33795747|gb|CF323743.1|CF323743
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATA
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|58662738|gb|CK051424.1|CK051424
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|33676561|gb|CF304800.1|CF304800
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|33674910|gb|CF303149.1|CF303149
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|58681064|gb|CK069751.1|CK069751
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATEST: gi|33676642|gb|CF304881.1|CF304881
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
EST: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAG TCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
genomic: CAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtattttttt ... ggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGAT
ttccttcatatagcatctatgctgttctaacaaaagtttcaacttggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAA
ttctaac putative branch site (score: 31)
taacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacttctggttggcaacaccagaagatagatgatatgcagtgtgttccttcatatagcatctatgctgttctaacaaaagtttcaacttggtgtaacagTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAA
- -cttctgg
- - - - - - - - -caccaga
- - - - - - - - - - - - - - - - -atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa