1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttggactcttggatcactaaccaaatatatttatccttgaaaaaagatactggccccaaacacaagtagacaagtctgacttgagttttgtttttcttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTGCCATGATTCAGCTTGAACTTCCTCATATCAACATTCTTTCAAAGATGG
species | Oryza sativa |
transcript | LOC_Os03g21914.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAACGGAAAAATTTCAACGTTTGTGCTGTGTACCTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|163929298|gb|EG711035.1|EG711035
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|58656588|gb|CK045268.1|CK045268
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: TGAAACGGAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|27546018|gb|CA764157.2|CA764157
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: TGAAACGGAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|33679512|gb|CF307751.1|CF307751
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: TGAAACGGAAAAATTTCAACGTTTGTGCTGTGTACCTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|86886652|gb|CI312537.1|CI312537
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: CAACGTTTGGTGCCNGTG-ACTTTTCCTTGATTCCCCAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCEST: gi|44673938|gb|CR287372.1|CR287372
genomic: CAACGTTT-GTGCC-GTGTAC-TTT-CTTGATT-CACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTC
EST: TGAAACGGAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|8857451|gb|AU094769.1|AU094769
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: GAAACGAAAAAATTNCAACCGTTTGTCCCGTGTACTTTCTTGATTCNCAG TTTGTTAGTGATGTGACAAAATACATCCAGTGGTTGCATGGCTTCTCTTTCEST: gi|218503197|gb|FG958153.1|FG958153
genomic: GAAACGAAAAAATTTCAA-CGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACAT-CAGTGGTTGCATGGCTTCTCTTTC
EST: TGAAACGGAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTEST: gi|58671472|gb|CK060158.1|CK060158
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
EST: TGAAACGGAAAAATTTCAACGTTTGTGCTGTGTACCTTCTTGATTCACAG TTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
genomic: TGAAACGAAAAAATTTCAACGTTTGTGCCGTGTACTTTCTTGATTCACAGgtttggactc ... cttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCT
tggccccaaacacaagtagacaagtctgacttgagttttgtttttcttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTGCCATGATTCAGCTTGAACTTCCTCATATCAACATTCTTTCAAAGATGG
gtctgac putative branch site (score: 33)
ttttgtttttctt putative PPT
ttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggactcttggatcactaaccaaatatatttatccttgaaaaaagatactggccccaaacacaagtagacaagtctgacttgagttttgtttttcttggttaagTTTGTTAGTGATGTGACAAAATACATCAGTGGTTGCATGGCTTCTCTTTCTGCCATGATTCAGCTTGAACTTCCTCATATCAACATTCTTTCAAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG