1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtgctattggcattttcctttgacttacctagtcattgtgtaagtcctatgcgtcatttgatttgtcaatatcttcatgacttaactcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAG
species | Oryza sativa |
transcript | LOC_Os03g21830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|88241493|gb|CI241342.1|CI241342
genomic: ACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|27576271|gb|CA998965.1|CA998965
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|86543827|gb|CI184033.1|CI184033
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTGTACTGCACAACGATTEST: gi|88208196|gb|CI208045.1|CI208045
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|27554299|gb|CA998199.1|CA998199
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|8857026|gb|AU094344.1|AU094344
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: ACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTEST: gi|86416263|gb|CI030274.1|CI030274
genomic: ACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
EST: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
genomic: AATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCGgtatgtgcta ... ctcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATT
taagtcctatgcgtcatttgatttgtcaatatcttcatgacttaactcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAG
acttaac putative branch site (score: 46)
atttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctattggcattttcctttgacttacctagtcattgtgtaagtcctatgcgtcatttgatttgtcaatatcttcatgacttaactcaatgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT