1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatgtacttctacttatcatggtatggttcttgtcattcaaaagaaaaaaaaaaggtaacagccatactttattcttactagtcttattatgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAAAAGTGAAGCAGAAACTAGAATGGGCTCAAAAGCAGCGTGAAGCAAACC
species | Oryza sativa |
transcript | LOC_Os03g21460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|87022853|gb|CI269789.1|CI269789
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|86523306|gb|CI163512.1|CI163512
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|33654738|gb|CF277352.1|CF277352
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGEST: gi|218494169|gb|FG952751.1|FG952751
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACG
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|2443021|gb|C74792.1|C74792
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: AACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|33808258|gb|CF330018.1|CF330018
genomic: AACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACT-GCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: GCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|86599871|gb|CI256033.1|CI256033
genomic: GCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|66913473|gb|CX100321.1|CX100321
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|33659109|gb|CF281722.1|CF281722
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|86522330|gb|CI162536.1|CI162536
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|86854994|gb|CI263061.1|CI263061
genomic: TTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|88226817|gb|CI224802.1|CI224802
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAEST: gi|33661942|gb|CF292909.1|CF292909
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAA
EST: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAG TACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCC
genomic: TAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttc ... tgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCC
aaaaaaaaaggtaacagccatactttattcttactagtcttattatgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAAAAGTGAAGCAGAAACTAGAATGGGCTCAAAAGCAGCGTGAAGCAAACC
ttcttac putative branch site (score: 4)
atactttattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtacttctacttatcatggtatggttcttgtcattcaaaagaaaaaaaaaaggtaacagccatactttattcttactagtcttattatgacttacagTACACTGTGAAGAACCTGAAATTCATACTGACGGTCGAGCCAGATAACGAAAAAGTGAAGCAGAAACTAGAATGGGCTCAAAAGCAGCGTGAAGCAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - tggttct
- - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - aaaaaaa