1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgttacttcggtcggtctgcctgtcaagcattgtaagacgagttcatccactcattcgacactactgatccttgtaatttcttggtcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGC
species | Oryza sativa |
transcript | LOC_Os03g21140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTG GCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAEST: gi|58653647|gb|CK042327.1|CK042327
genomic: TTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGgtatgtgtta ... tcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
EST: CCACCACCATGGTCGAGTCACCGCCTGATTCTG GCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAEST: gi|86494717|gb|CI137350.1|CI137350
genomic: CCACCACCATGGTCGAGTCACCGCCTGATTCTGgtatgtgtta ... tcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
EST: GTCGAGTCACCGCCTGATTCTG GCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAEST: gi|218489381|gb|FG965234.1|FG965234
genomic: GTCGAGTCACCGCCTGATTCTGgtatgtgtta ... tcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
EST: TTCCAGTCAGTCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTG GCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAEST: gi|218490471|gb|FG964032.1|FG964032
genomic: TTCCAGTCAGCCTCTTGCCACCACCATGGTCGAGTCACCGCCTGATTCTGgtatgtgtta ... tcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
EST: GCCACTACCATGGTCGAGT-ACCGCCTGATTCTG GCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
genomic: GCCACCACCATGGTCGAGTCACCGCCTGATTCTGgtatgtgtta ... tcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCA
agttcatccactcattcgacactactgatccttgtaatttcttggtcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGC
tactgat putative branch site (score: 7)
ttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttacttcggtcggtctgcctgtcaagcattgtaagacgagttcatccactcattcgacactactgatccttgtaatttcttggtcgtttatagGCGAGCAGCTCAAGGGAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA