1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgatctggtaagatttgtgcgttgatttatcactgattatgagtactcttatattattacagtttatttgatgctaaatctctttaatgtattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCAT
species | Oryza sativa |
transcript | LOC_Os03g21080.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAG CACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTEST: gi|58671729|gb|CK060415.1|CK060415
genomic: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAGgtctgtagca ... tattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCT
EST: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAG CACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTEST: gi|58661220|gb|CK049900.1|CK049900
genomic: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAGgtctgtagca ... tattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCT
EST: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAG CACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTEST: gi|3764133|gb|AU030633.1|AU030633
genomic: GAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAGgtctgtagca ... tattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCT
EST: AACCAGATTGTTCTTCAAGCTACTTGAANGAATGCATTACCCATTTTGAG CACAACAAAACAGGAGACAGCTTGTTACTAGGCNCAAGTTCACGGAGCCCT
genomic: AACCAGATTGTTCTTCAAGCTACTTGAA-GAATGCATTACCCATTTTGAGgtctgtagca ... tattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCT
actcttatattattacagtttatttgatgctaaatctctttaatgtattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCAT
tatattattacagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatctggtaagatttgtgcgttgatttatcactgattatgagtactcttatattattacagtttatttgatgctaaatctctttaatgtattctgcagCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-tgatctg
- - - - - - - tttgtgc
- - - - - - - - - - -gttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct