Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT

Basic information

species Oryza sativa
transcript LOC_Os03g18690.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G104373_T01 (Zea mays), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGAC--ATCCACCACTCAT
                                                                       || |   |  || | |||   ||           ||||     ||| | |    ||  |||   |   |  |  || ||| || ||||||          | ||||||||| |||||| || ||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| || ||||| || || ||||||||||||  |||  |  | |  
-------------------------------------------------------------------attcaccaga-gttaaccttttgtaat--------agcctgcaacttgaatacaaggtcacagaaaatat-ccactcatgaactgctattttta----------ttttctgttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGAAAGAAGGCGTGCCGGAGGGCCTATATATGTGAGACTCATCAGCAGCGC--

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA10G04920.1 (Glycine max), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT-
                                                                                      ||| |  | |   ||||   ||   |  | | ||| |   ||   | |    | ||     || ||     | |    || || ||  | | ||| || ||||||| |||||||| || ||||||||||| || || || ||||| |||||||| ||||| || || |||||||| ||||||||| | | | | |    || 
------------------------------------------------------------------------------------tgtttaatgtgtatctttggtttgtatt--gtatataatataatttgaagttttttttctccccaatttatgatatcttcttactattacttttttg-ttcagGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGAAATA-CTATCCTCTATC

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgt-tgcacttctctttttacatttgctgttctt-----ctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATC--CACCACTCAT
                                                                                            |  |||   |    ||   ||      | |||| | ||  ||   ||||||   |  |||    |    | || |  | || ||     ||    ||| ||||||| |||||||| ||||||||||| || || ||||| ||||| |||||||| ||||| || || ||||| || |||||||||  ||||  || || |   
--------------------------------------------------------------------------------------------aagtgatcctattttgttttctacctttttttgga-ggggtgtgtgtcttttcctttactctcatgaccaaatgttttttttttaaaatcttgctcttcagGTGACGCATGCCGACTTCAAGAAGGCAAAGGATAAGGTTATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTGAAGCATCTTCATCATTT--

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA13G19280.1 (Glycine max), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
                                                                           | ||   ||| | ||     |  | |||   ||   | | || ||| ||   || | |     | ||     || ||     | |    || || ||  | | ||| |  ||||||| |||||||| || ||||||||||| || || || ||||| |||||||| ||||| || || |||||||| ||||||||| | |    || ||  |
--------------------------------------------------------------------------taatgtttatcttctc----tttggcttgtattgt--ttataatataatt---tgaagttt---ttttctccccaatttatgatatcttcttactattactattttggtc-agGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGAAAAACTATCCTCTATT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcaga-acatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCAC-TCAT
                                                                            ||    |  |||    || | ||||  |||  |   || | ||| |    ||    |     |   ||  |   |  ||     || || || |    ||   ||  || ||||||||||| | ||||||||||| || || |||||||| |||||||||||||| ||||| || || ||||| || || |||| | |     | ||  ||  
----------------------------------------------------------------------------gtagagactcttaaccattt-agttcaagc-acatacaaacacacacacacacaccacttgggcaattacta-gccactgacgcta-atgtgtttaaattggatttgttcagGTGACACATCCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAAGGCCTCTACATGTAAAATTATAATCATATCG-

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgct-gttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
                                                                                             |  |  ||         ||||  || |  || ||| ||| |||| ||||||    | || |  ||| || |||| | | |||||| ||| |||||||||| ||||  || ||||||||||| || |||||||| |||||||||||||| ||||| || || ||||| ||||| ||||||   || ||| ||   |
--------------------------------------------------------------------------------------------gtaaggattctctggcttctcaccacttgatt-catcgaacgcaa-tctttga-ataattttactttaacctttgtttggtcttctattggtttagGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGAGTTCCTGAAGGTCTTTACATGTGAATGATGCACAACGACT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
                                                                       |  ||||   ||| | ||   | |||| |    | |  |||  ||   || |  | | | |      ||    ||  | ||  ||  ||| |  | |||         ||||| ||||||| ||||  || ||||||||||| || |||||||| |||||||||||||| ||||| || || ||||| ||||| |||||| |   |  | ||  ||
---------------------------------------------------------------------ggaagaagt-tgaatgcatt---acctgactacatgtt-tgct--gattttagtcacctaggaccaggatcccaattaaatttgactggttaaa--tactg---------tgcttcagGTGACTCATGTAGACTTCAAGAAGGCAAAGGAGAAGGTGATGTTCAAGAAGAAAGAAGGGGTGCCAGAAGGACTTTACATGTGAAAACACTGCTACATAT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S109_234V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaactcagctt-tgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctcttt-ttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
|| |  | | |  | ||||      ||      | |   ||| |    ||| |  | |    |  |    || |        | |  |      ||   |||| || ||     | ||  |  ||        | ||   |  |  |||| ||   |   |   ||| | ||||     | | ||  ||||||| || | ||||||||||||||| |||||||| || ||||  ||||||||||| || || || || ||  | || ||||     || ||  ||   |
gtgagactgttcgtattttgcatttcatgaatatgggcttcttgactagttgaaatcagg--tgccagttatgcagtactttattattgcaccttcaaggttttagttg-----ataatgtgattttgattttttcagcacggttgtgcaattaaatggatcttattggatgtt-----ggtcctgcagGTGACTCAAGTCGATTTCAAGAAGGCTAAAGAGAAAGTGATGTATAAGAAGAAGGAGGGCGTGCCTGAGGGTTTGTACATGTAGAGTATTCAGTACAGGT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
                                        ||  | |||     ||   |||||  ||  |  | | ||        ||  || | |    |||  ||     |       ||||     ||  |  |  ||  ||| | |    | ||    |||    |  |  | ||||   ||||||| || |  |||||||||||||||||||||||||| ||||  |||||||||||||||||||| || ||  | || ||||     || ||   |   |
---------------------------------------gtaagattgtcgtcttttgtactttgcagt-tcgtgaatggaggctaatt--gaccag---ctgaaatgaataaaagttgcttttgatcaaaagacctggtttc-ttgtaatgagttgttattgttttggatggtgatcttgc---agGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGAAGGAAGGTGTACCTGAGGGATTATACATGTAGATTATTCAGTGCAGGT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttg--agctgcgctcagaac---atatttgcatggaatgcaagtctttgttgcacttctcttttta--catttgctgtt--cttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCA-CCACTCAT
                                  |||  | | | || |  ||  |     ||    | ||  | | |||   || |   || |   | |||   || ||| ||||   |   ||| ||||| |   || |     |||||    |||| |   ||   |||  ||||    |  |  |||   ||||||| || || || ||||||||||| || || || || |||| ||||||||||||||||||||| || ||| | |||||||   | |  ||  ||     
------------------------------gtgagcttgccatttctttgtattct----tttatatgtatttttaatgcgtctcgtcagaggttacacttttttagttgccctcatggctgtataattgcaggctttgaattggcttgttttgattctgtgactaagtattgactgtggattcttaatgccacagGTGACTCAAGCGGACTTCAAGAAGGCTAAGGACAAAGTGATGTACAAGAAGAAGGAAGGTGTACCCGAGGGGTTATATATGTAGAATACTCAGTCAAGTG-

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: EFJ20767 (Selaginella moellendorffii), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT-
                                                                                                                                     | |  |  | | |||  ||| |   || | | |   | | ||||  | ||  |||| || || || |||||||||||||| |||||||||||||||| ||||||||| ||||| || ||||| || || || |||| | | | ||  | |   | 
-------------------------------------------------------------------------------------------------------------------------------------gtagtttctcgatgcttttcacaactttcttgtaacgattttcttcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGAAAGAAGGCGTCCCGGAGGGCCTGTACATGTAA-ATAGCCGTCCCAGCTT

upper sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 5
lower sequence: EFJ32659 (Selaginella moellendorffii), 3'ss of exon 5
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT-
                                                                                                                                     | |  |  |   |||  ||| |   || | | |   | | ||||  | ||  |||| || || || |||||||||||||| |||||||||||||||| ||||||||| ||||| || ||||| || || || |||| | | | ||| | |   | 
-------------------------------------------------------------------------------------------------------------------------------------gtagtttctcaatgcttttcacaactttcttgtaacgattttcttcttctccagGTAACTCAAGCTGATTTCAAGAAGGCGAAAGAGAAGGTCATGTACAAGAAGAAAGAAGGCGTCCCGGAGGGCCTGTACATGTAA-ATAGCCATCCCAGCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88446410|gb|CI563240.1|CI563240
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|163925823|gb|EG709619.1|EG709619
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|300216031|gb|HO088657.1|HO088657
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAAGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAG
EST: gi|163925770|gb|EG714606.1|EG714606
EST:     TTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: TTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89185028|gb|CI049574.1|CI049574
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|8956100|gb|BE229904.1|BE229904
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|218480558|gb|FG955804.1|FG955804
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|14713668|gb|AU197642.1|AU197642
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86432976|gb|CI093319.1|CI093319
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|87021376|gb|CI295435.1|CI295435
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|58595794|gb|CK006322.1|CK006322
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86417508|gb|CI031717.1|CI031717
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|2427516|gb|C71979.1|C71979
EST:     AATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAA
genomic: AATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAA-Ggtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAA
EST: gi|2442891|gb|C74662.1|C74662
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86526559|gb|CI166765.1|CI166765
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|13806065|gb|AU181335.1|AU181335
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAANAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88289164|gb|CI553140.1|CI553140
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|66924648|gb|CX111496.1|CX111496
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88251137|gb|CI349367.1|CI349367
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89180494|gb|CI044773.1|CI044773
EST:     CNATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|29632970|gb|CB637979.1|CB637979
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAAAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|87028005|gb|CI276361.1|CI276361
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89166353|gb|CI103443.1|CI103443
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|29675946|gb|CB672221.1|CB672221
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|14981474|gb|BI306152.1|BI306152
EST:     CAATATGTACGGAGGCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|163929240|gb|EG712693.1|EG712693
EST:     GGCCGGGTTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: GGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86485228|gb|CI127861.1|CI127861
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89164297|gb|CI101385.1|CI101385
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89173969|gb|CI041862.1|CI041862
EST:     CNATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|29685470|gb|CB681745.1|CB681745
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86433617|gb|CI093960.1|CI093960
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88957058|gb|CI095102.1|CI095102
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88441908|gb|CI557561.1|CI557561
EST:     GCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: GCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|8857474|gb|AU094792.1|AU094792
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86415212|gb|CI069615.1|CI069615
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGTAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89193341|gb|CI050639.1|CI050639
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86434829|gb|CI106062.1|CI106062
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTCCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86483535|gb|CI126168.1|CI126168
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89175440|gb|CI042461.1|CI042461
EST:     CTATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86603579|gb|CI112339.1|CI112339
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89166512|gb|CI103798.1|CI103798
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|86864700|gb|CI344238.1|CI344238
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|218487222|gb|FG954424.1|FG954424
EST:     AATATGTACGGAGGCCTGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTC
genomic: AATATGTACGGAGGCC-GGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTC
EST: gi|9865324|gb|AU101074.1|AU101074
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88840618|gb|CI080072.1|CI080072
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88828251|gb|CI000360.1|CI000360
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88989253|gb|CI043752.1|CI043752
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88969121|gb|CI099072.1|CI099072
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCTAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88273195|gb|CI388651.1|CI388651
EST:     CAATATGTAC-GAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATTCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88416707|gb|CI545986.1|CI545986
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|88979202|gb|CI025704.1|CI025704
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
EST: gi|89186491|gb|CI048163.1|CI048163
EST:     CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAG                         GTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG
genomic: CAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 70 (downstream exon)
Score: 37

AGAAGAGTTTGTGATGACCAAGGATGAGTTTTCTGGTGCTGACATCAAAGCAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGgtaactcagc ... gttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT
                                      ttcttctgttgcttt  CT-rich tract
                       tttttacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttagGTGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATGTGAGACATCCACCACTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA