1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ctaagtcagaaaactatactagtttttttttttggttatgttacttataatcattcatctttactctgtttcctgacagttctttaagtttatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAAGCAAAA
species | Oryza sativa |
transcript | LOC_Os03g18080.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCAAAAGTTGCCTGCTGGGCGGGTACATAAGCCAACTCTGGNAAACAG GCTGACCCACGTTTCGGTTTGGAACEST: gi|117222519|gb|CT845898.1|CT845898
genomic: CATCAAA-GTTGCCTGCTGGGCGGGTACATAAGCCA-CTCTGG-AAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCG-TTTGGAAC
EST: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAG GCTGACCCACGTTTTGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAAEST: gi|29624693|gb|CB629704.1|CB629704
genomic: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
EST: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAG GCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
genomic: GGGCATCAAAGTTGCCTGCTGGGCGGGTACATAAGCCACTCTGGAAACAGgttagtgatg ... tatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAA
tataatcattcatctttactctgtttcctgacagttctttaagtttatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAAGCAAAA
tcctgac putative branch site (score: 25)
ttctttaagtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaagtcagaaaactatactagtttttttttttggttatgttacttataatcattcatctttactctgtttcctgacagttctttaagtttatatttcagGCTGACCCACGTTTCGTTTGGAACAAAAATTTGCTAGAGGAGTTTATTGAAGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - cagaaaa
- - - - - - - - - - - - - - - - - - - tgttact