1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaagttatttgaatctgttaaatgtggattctgattgacattttgttgcaacactgcaactattatagcttgtataaccatgtgtgactatgcaatgcagAAGTATACGCTGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCATTTGGGCTGTTCTCAACGTTTACTCCATCG
species | Oryza sativa |
transcript | LOC_Os03g17600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGCATTTTATGACCAAACCAAATTCAAAGGAG AAGTATACGCTGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCAT
genomic: GCAAAGGCATTTTATGACCAAACCAAATTCAAAGGAGgtaatcttct ... tgcaatgcagAAGTATACGCTGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCAT
ttgcaacactgcaactattatagcttgtataaccatgtgtgactatgcaatgcagAAGTATACGCTGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCATTTGGGCTGTTCTCAACGTTTACTCCATCG
gtataac putative branch site (score: 57)
aactattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagttatttgaatctgttaaatgtggattctgattgacattttgttgcaacactgcaactattatagcttgtataaccatgtgtgactatgcaatgcagAAGTATACGCTGATCCAAGTCACTCATCATATAATGCCCTTGAATTTGCATTTGGGCTGTTCTCAACGTTTACTCCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -tctgtta
- - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgt