Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G382038_T01 (Zea mays), 3'ss of exon 6
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgta-cagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                         | || ||  || |  ||     |       | | | |||||    | | ||||||||    ||  |||      ||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||
------------------------gtatgctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatatt--ggtgtttgtgattgtatgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G157772_T01 (Zea mays), 3'ss of exon 2
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                         | || ||  || |  ||     |       | | | |||||    | |  |||||||    |   || ||  ||    |||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| |||||||
------------------------gtatgctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtg-attgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTAGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G177373_T02 (Zea mays), 3'ss of exon 5
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                         | || ||  || |  ||     |       | | | |||||    | | ||||||||    |   ||  |     |  |||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||
------------------------gtatgctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatattggtgtttgtggttgtctgta-acagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 5
gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgta-cagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
        | || ||  | | |  |||||| |    ||     |    ||  | | ||  || ||   | ||     ||||   ||  ||||   || |||| ||||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||||||||||
-------gtatactagttctctg-ctctgtgagagacagtacgttgtttaatagtttt--tcctgg--tatttcatgattttggtgtttgtaatttcctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 11
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                         | || ||  || |  ||     |       | | | |||||    | | ||||||||    |   || ||  ||    |||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||
------------------------gtatgctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatattggtgtttgtg-attgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 4
gtacagtctctattatatatataactctgttaagtc-caactattcaaatacaaatct-tgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                         | || ||  || |   ||    |       | | | |||||    | | ||||||||    |   || ||  ||    |||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||
------------------------gtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtg-attgtctgtaacagACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 5
gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcct-gttctgatatttaaatggatgtataatcatgt--acagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
        | ||||   | ||   || |  |  |||  |   |  || | |   | ||   | | |||| |      ||| |||   | ||   ||| || |  |||||| || |||||||| || || || || |||||||||||||| ||||||||| ||||||| || ||
--------tatatttattctacttctgtcatgtgtcatatcttgaaagttctgtttttcagcttatccttgagacactatctaatatgttgggaaataatttttacagACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 5
gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
 |    |   |  |  ||   ||| ||  |||  |     |     | ||    |          |  || | |    | |||||     |  |||  |  |||||| || |||||||| || || || ||| |||||||| | || |||||||||||||||||||| ||
-tcttctaatttcttaatgagtaa-tcaattatatgtttttccctgagtatgctttggacattaatgatggttttccttgtaaat---catgcaatacttaacagACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGAGAGTTGGAGCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677155|gb|CK065842.1|CK065842
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|33658124|gb|CF280738.1|CF280738
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTG
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTCCAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58662662|gb|CK051348.1|CK051348
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAAACCTGTCAAG                         ACCATCAAGACAAACGTTATC
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATC
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58668375|gb|CK057061.1|CK057061
EST:     CTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAAACCCTTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATG
genomic: CTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAA-CCCT-GTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATG
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58664972|gb|CK053658.1|CK053658
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|428184|gb|D24332.1|D24332
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|88407211|gb|CI581298.1|CI581298
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAA-CGTTATCGGAACCTTGA-CATG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATG
EST: gi|33676960|gb|CF305199.1|CF305199
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAAAATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAA-ATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58590704|gb|CF989012.1|CF989012
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58595983|gb|CK006511.1|CK006511
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58666725|gb|CK055411.1|CK055411
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG                         ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG
genomic: ACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctc ... tcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG
                    ttctgat  putative branch site (score: 3)
                         atatttaaatggatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacagtctctattatatatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgttctgatatttaaatggatgtataatcatgtacagACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT