1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtgatatcaccattgcagaaaccttctgcaaacatcttctgccagccaatgatgctggttccacagttctttactgcatgccatcgataatttttcattttattttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTC
species | Oryza sativa |
transcript | LOC_Os03g16690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAG GTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTEST: gi|29618292|gb|CB623304.1|CB623304
genomic: AGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGgttagtgata ... attttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTT
EST: AGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAG GTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTEST: gi|33380676|gb|CF196019.1|CF196019
genomic: AGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGgttagtgata ... attttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTT
EST: AGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAG GTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTT
genomic: AGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGgttagtgata ... attttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTT
ggttccacagttctttactgcatgccatcgataatttttcattttattttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTC
tttttcattttatttt CT-rich tract
atcgataatttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgatatcaccattgcagaaaccttctgcaaacatcttctgccagccaatgatgctggttccacagttctttactgcatgccatcgataatttttcattttattttctcagGTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA