1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagctaacctgtgcccattccttcaatcctgtgttttgctaattctgctttggtgctcacagcttctatatcttatttcattttcactccagACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTACACCTTTGAACAAATCAACCATGACAAGTGATGAGTACAAGAATGCTGTT
species | Oryza sativa |
transcript | LOC_Os03g15780.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGT ACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTACEST: gi|88360057|gb|CI610171.1|CI610171
genomic: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaac ... ttcactccagACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTAC
EST: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGT ACCCAAGCTTTCTCCAGG
genomic: GGCAAGTCCCGGCTGAACCTGTTGCTATCTAAAGTGCACAATTCAAATGTgtaagctaac ... ttcactccagACCCAAGCTTTCTCCAGG
gctaattctgctttggtgctcacagcttctatatcttatttcattttcactccagACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTACACCTTTGAACAAATCAACCATGACAAGTGATGAGTACAAGAATGCTGTT
tgctcac putative branch site (score: 2)
tcttatttcattttc putative PPT
ttctatatcttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctaacctgtgcccattccttcaatcctgtgttttgctaattctgctttggtgctcacagcttctatatcttatttcattttcactccagACCCAAGCTTTCTCCAGGATTTGTAAAGTTACACACTCGGCAGTTTGGTACACCTTTGAACAAATCAACCATGACAAGTGATGAGTACAAGAATGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT