1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgggacaacacaaatgctacaatagctattatgtttgaactctagacttgtactcactttctttcttctgtcgtgcagGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACT
species | Oryza sativa |
transcript | LOC_Os03g15590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAG GCTGTGATGACATTAAGAGATTCAATEST: gi|33655703|gb|CF278317.1|CF278317
genomic: TCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGgtttgggaca ... tgtcgtgcagGCTGTGATGACATTAAGAGATTCAAT
EST: TCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAG GCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACAC
genomic: TCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGgtttgggaca ... tgtcgtgcagGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACAC
agctattatgtttgaactctagacttgtactcactttctttcttctgtcgtgcagGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACT
tactcac putative branch site (score: 24)
cttgtactcactttct CT-rich tract
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgggacaacacaaatgctacaatagctattatgtttgaactctagacttgtactcactttctttcttctgtcgtgcagGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA