1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactttttttcatgttttataatgtgtaatatagccattcattgaaccatcaactgtagtacctaaacttctcttatttgaatgtctaaaactgtggtacctaaacttctcttacttgaatgcctaaccaacatcttctatcaaccgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG
species | Oryza sativa |
transcript | LOC_Os03g14990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAEST: gi|29658486|gb|CB654761.1|CB654761
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
EST: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAEST: gi|218490820|gb|FG955462.1|FG955462
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
EST: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAEST: gi|33674921|gb|CF303160.1|CF303160
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
EST: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAEST: gi|218496154|gb|FG946668.1|FG946668
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
EST: CACATGCAGATGCAACTTATGACTTCAGATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAEST: gi|218497637|gb|FG960443.1|FG960443
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
EST: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAG GGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
genomic: CACATGCAGATGCAACTTATGACTTCAAATACGGTGTTAGAGCAGTGCAGgtactttttt ... cgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGA
ctaaacttctcttacttgaatgcctaaccaacatcttctatcaaccgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG
gcctaac putative branch site (score: 36)
aatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttttcatgttttataatgtgtaatatagccattcattgaaccatcaactgtagtacctaaacttctcttatttgaatgtctaaaactgtggtacctaaacttctcttacttgaatgcctaaccaacatcttctatcaaccgaatgatagGGAGGTGGAAGATCATCAGCAAGAGAGACCATTGGAAGGGTGGCTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA