1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacagTACTCCTATCTTCACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCTGCAGCAGCAGCAGCAGCTACTGGTGCAGCTGGATTTGAATTTGATGTGGAC
species | Oryza sativa |
transcript | LOC_Os03g13970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAG TACTCCTATCTTCACTGEST: gi|58663975|gb|CK052661.1|CK052661
genomic: ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTTCACTG
EST: ATCGTTCATGTCCCTCCCGGTGAACATGCCCTTTCCGATGTGCTTATAAG TACTCCTATCTTCACTGGTGAAGEST: gi|88358175|gb|CI605100.1|CI605100
genomic: ATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTTCACTGGTGAAG
EST: TCGTTCATGTCCCTCCCGGGGAAAATGCCCTTTTCCGATGTGCTTATAAG TACTCCTATCTTTCACTGGTG
genomic: TCGTTCATGTCCCTCCCGGTGAAAATGCCCTTT-CCGATGTGCTTATAAGgtaataatgt ... cttttcacagTACTCCTATCTT-CACTGGTG
taggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacagTACTCCTATCTTCACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCTGCAGCAGCAGCAGCAGCTACTGGTGCAGCTGGATTTGAATTTGATGTGGAC
tatccctcttttcac CT-rich tract
ttgttttaatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatgtatcaatttgttcgggctctaggttgttgttttaatgtatttctgctgacaaattaatatccctcttttcacagTACTCCTATCTTCACTGGTGAAGAAGGTGGAAGCGGTTTTGCTGCTTCTGCAGCAGCAGCAGCAGCTACTGGTGCAGCTGGATTTGAATTTGATGTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA