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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttacagcacttgttattctcccagcttttcataattgtaggaactgttctttttttttatttagttttttttctcatgtgatatatccaactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGTGGGGATGTGTGCCTGTCCTCTTCATCTTCGGCTGTCAACAGGACTCCTG

Basic information

species Oryza sativa
transcript LOC_Os03g13790.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117217875|gb|CT845173.1|CT845173
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|29628330|gb|CB633341.1|CB633341
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|29621639|gb|CB626650.1|CB626650
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|29630702|gb|CB635711.1|CB635711
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAGAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|58612137|gb|CK039849.1|CK039849
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|58666001|gb|CK054687.1|CK054687
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|29618831|gb|CB623843.1|CB623843
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
EST: gi|88337044|gb|CI628130.1|CI628130
EST:     CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATA
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATA
EST: gi|29617184|gb|CB622196.1|CB622196
EST:     CTAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTG                         GGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT
genomic: CAAAACTGCATCTGAAGCCTCGGAGATTCAAAACTTTCGTAGAAGCATTGgtttgttaca ... aactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttctttttttttatttagttttttttctcatgtgatatatccaactttatagGGAAATCAACTACTAAAGGATAGAAATAAAACCAGAAAAAAGTGTCCACGTGGGGATGTGTGCCTGTCCTCTTCATCTTCGGCTGTCAACAGGACTCCTG
      tttttttttatttagt  TA-rich tract